I'm still not having any luck seeing the molecule, even in 11.9.18.
<script type="text/javascript">
jmolInitialize('../../nosession/jmol');
jmolApplet([250, 250]);
jmolLoadInline('\n Marvin 12290623562D \n\n 23
26 0 0 0 0 999 V2000\n 4.3508 0.4841 0.0000 C 0 0 0
0 0 0 0 0 0 0 0 0\n 3.6363 0.0716 0.0000 C 0 0 0 0 0 0
0 0 0 0 0 0\n 3.6363 -0.7535 0.0000 C 0 0 0 0 0 0 0 0 0
0 0 0\n 4.3508 -1.1660 0.0000 C 0 0 0 0 0 0 0 0 0 0 0
0\n 5.0653 -0.7535 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n
5.0653 0.0716 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n 5.7797
0.4841 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n 5.7797 -1.1660
0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n 6.4942 -0.7535 0.0000
C 0 0 0 0 0 0 0 0 0 0 0 0\n 6.4942 0.0716 0.0000 C 0 0
0 0 0 0 0 0 0 0 0 0\n 6.4942 1.7216 0.0000 C 0 0 0 0 0
0 0 0 0 0 0 0\n 5.7797 1.3091 0.0000 C 0 0 0 0 0 0 0 0
0 0 0 0\n 7.2087 0.4841 0.0000 C 0 0 0 0 0 0 0 0 0 0 0
0\n 7.2087 1.3091 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n
6.9067 -0.6429 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n 7.6212
-0.2304 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n 8.4181 -0.4439
0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n 3.9383 -1.8804 0.0000
C 0 0 0 0 0 0 0 0 0 0 0 0\n 4.7633 -1.8804 0.0000 C 0 0
0 0 0 0 0 0 0 0 0 0\n 7.9231 1.7216 0.0000 O 0 0 0 0 0
0 0 0 0 0 0 0\n 5.0653 0.8966 0.0000 C 0 0 0 0 0 0 0 0
0 0 0 0\n 5.0653 -1.5785 0.0000 H 0 0 0 0 0 0 0 0 0 0 0
0\n 5.7797 -0.3409 0.0000 H 0 0 0 0 0 0 0 0 0 0 0 0\n 1
2 1 0 0 0 0\n 1 6 1 0 0 0 0\n 2 3 1 0 0 0 0\n 3 4 1 0 0
0 0\n 4 5 1 0 0 0 0\n 4 18 1 0 0 0 0\n 4 19 1 0 0 0 0\n 6
5 1 0 0 0 0\n 5 8 1 0 0 0 0\n 5 22 1 0 0 0 0\n 7 6 1 0
0 0 0\n 6 21 1 0 0 0 0\n 7 10 1 0 0 0 0\n 12 7 1 0 0 0 0\n
7 23 1 0 0 0 0\n 8 9 1 0 0 0 0\n 9 10 1 0 0 0 0\n 10 13 1 0
0 0 0\n 10 15 1 0 0 0 0\n 11 12 1 0 0 0 0\n 11 14 1 0 0 0 0\n
13 14 1 0 0 0 0\n 13 16 1 0 0 0 0\n 14 20 2 0 0 0 0\n 16 15 2
0 0 0 0\n 16 17 1 0 0 0 0\nM END\n');
</script>
I think I must be missing something obvious here, but I can't figure out what.
If it helps, Show -> Extract MOL data shows,
zapped
Jmol version 11.9.18 2010-01-12 17:49
EXTRACT: visible
0 0 0 0 0
-- Bob G.
On 1/13/10 5:37 PM, "Robert Hanson" <[email protected]> wrote:
Works fine in Jmol 11.9.18. Unfortunately we JUST released 11.8.16, and I
missed this fix in there. Please at least try the Jmol 11.9.
On Wed, Jan 13, 2010 at 3:41 PM, Grossman, Robert B <[email protected]>
wrote:
Hi, I spoke too soon before. I have a new problem. Now Jmol is only
occasionally displaying the molecule. For example, this script gives a blank
Jmol:
<script type="text/javascript">
// <!--
function getMol_0() {
return '\n Marvin 10270415522D\n\n 9 9 0 0 0 0 999
V2000\n -2.2457 0.8188 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n
-2.2457 -0.0063 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n -1.5313
-0.4188 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n -0.8168
-0.0063 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n -0.8168 0.8188
0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n -0.1023 1.2313 0.0000
O 0 0 0 0 0 0 0 0 0 0 0 0\n -1.5313 1.2313 0.0000 C 0 0
0 0 0 0 0 0 0 0 0 0\n -1.5313 2.8813 0.0000 C 0 0 0 0 0
0 0 0 0 0 0 0\n -1.5313 2.0563 0.0000 C 0 0 0 0 0 0 0 0
0 0 0 0\n 7 1 1 0 0 0 0\n 7 5 2 0 0 0 0\n 1 2 2 0 0 0
0\n 2 3 1 0 0 0 0\n 3 4 2 0 0 0 0\n 4 5 1 0 0 0 0\n 5 6
1 0 0 0 0\n 8 9 1 0 0 0 0\n 7 9 1 0 0 0 0\nM APO 1 9
1\nM STY 1 1 SUP\nM SAL 1 2 8 9\nM SBL 1 1 9\nM SMT 1
Et\nM END\n';
}
// -->
</script>
<script type="text/javascript">
jmolInitialize('../nosession/jmol');
jmolApplet([250, 250]);
jmolLoadInline(getMol_0());
</script>
As does this:
<p style="text-align:center;">
<script type="text/javascript">
jmolInitialize('../../nosession/jmol');
jmolApplet([250, 250]);
jmolLoadInline('\n Marvin 10270415522D\n\n 9 9 0 0 0
0 999 V2000\n -2.2457 0.8188 0.0000 C 0 0 0 0 0 0 0
0 0 0 0 0\n -2.2457 -0.0063 0.0000 C 0 0 0 0 0 0 0 0 0 0
0 0\n -1.5313 -0.4188 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n
-0.8168 -0.0063 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n -0.8168
0.8188 0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n -0.1023
1.2313 0.0000 O 0 0 0 0 0 0 0 0 0 0 0 0\n -1.5313 1.2313
0.0000 C 0 0 0 0 0 0 0 0 0 0 0 0\n -1.5313 2.8813 0.0000
C 0 0 0 0 0 0 0 0 0 0 0 0\n -1.5313 2.0563 0.0000 C 0 0
0 0 0 0 0 0 0 0 0 0\n 7 1 1 0 0 0 0\n 7 5 2 0 0 0 0\n
1 2 2 0 0 0 0\n 2 3 1 0 0 0 0\n 3 4 2 0 0 0 0\n 4 5 1 0
0 0 0\n 5 6 1 0 0 0 0\n 8 9 1 0 0 0 0\n 7 9 1 0 0 0
0\nM APO 1 9 1\nM STY 1 1 SUP\nM SAL 1 2 8 9\nM SBL 1 1
9\nM SMT 1 Et\nM END\n');
</script>
</p>
Once in a while I can induce Jmol to give me a picture, but it's not
reproducible.
Any ideas?
Now using Jmol 11.8.10.
________________________________
From: Angel Herráez <[email protected]>
Reply-To: <[email protected]>
Date: Wed, 13 Jan 2010 15:28:46 -0500
To: <[email protected]>
Conversation: [Jmol-users] Jmol demo page hangs
Subject: Re: [Jmol-users] Jmol demo page hangs
Yes, I see the same: the applet ends loading, but stays empty.
Try changing to JmolApplet 11.8.10
It works for me with your code
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