Hi,
I encountered a "weird" behavior of Jmol when loading the following test
files. The files "G2.pdb and A2.pdb" (you can download them from
(http://dl.free.fr/ohTh0iiOA and http://dl.free.fr/oYgFA5qU4
<http://dl.free.fr/oYgFA5qU4> ) are modified pdb files where I replaced
among other things the residue code with the three last characters of a PDB
code. In the examples i am sending you, some lines are drawn between the "P"
and "P+" atoms only for residue LAT not for the numerous other ones. I
encountered a similar problem with "RAM" residues. (I use autobond off in
jmol and no Conect lines in the pdb files). For further checks you can visit
the http://tatooine.u-strasbg.fr/~sws2/NID.php?resolution=2.5&base=DG or
http://tatooine.u-strasbg.fr/~sws2/NID.php?resolution=2.5&base=DA
<http://tatooine.u-strasbg.fr/~sws2/NID.php?resolution=2.5&base=DG> page. I
changed the "LAT" or "RAM" residue names for something else and the lines
strangely disappear. Any thoughts ?
Pascal
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