Hi Bob, Thanks for the advice on using "backbone off". It works fine now. Yet, still it is difficult to understand why Jmol connects P atoms separated by more than 5 Å in a carbohydrate fine. Anyway, Jmol is pretty robust and it can swallow some very unconventional PD files. In fact, we modified pdb files in order to be able to tag them with respect to specific criteria. Does Jmol read columns that are not defined by the PDB standards like for example comments written after the 80 character conventional PDB lines or, like Pymol, is it possible to use the empty columns after the B-factors for writing symmetry codes (see D0Z0 below).
Example of a ymol pdb line containing a symmetry code ATOM 1086 N ARG A 51 29.887 -6.322 19.972 1.00 30.33 D0Z0 N Being able to read symmetry codes or comments would be really useful for us (if a similar option is not yet available). By the way, is there a symmetry marker in Jmol ? Pascal
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