Any file that weird is going to show weird behavior ;) Quite the innovative
use of the PDB format, by the way. There's a lot of nonstandard stuff there,
and it is good to see that Jmol can handle it. For example, multiple
nonsequential groups with the same residue number. Wow.
LAT and RAM are being interpreted as carbohydrate. What you are seeing there
is the backbone. Just use
backbone off
Also, here is probably your best bet for connect:
connect 1.0 1.6 {*} {within(group, _1)} radius 0.01 create
Bob
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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