There might be easier ways to do this than functions, then. spheres are simple; cones are basically simple functions; parallelpipeds are just planes. So I think the only function you need there is for the cones. Something like this:
isosurface cone1 color gray color translucent 5 functionxy = "-0.71*(x**2+y**2)**.5" On Wed, Sep 14, 2011 at 12:43 PM, Nicholas Smith <[email protected]>wrote: > I am planning on using the applet and will be attempting to generate fairly > "standard" objects such as spheres, cones, parallelepipeds, etc. Mostly > geometric objects. It should not be a completely irregular object. > > > On Wed, Sep 14, 2011 at 1:20 PM, Robert Hanson <[email protected]> wrote: > >> I realize there is not a lot there on that, and some of it has recently >> changed. >> >> Q: Are you planning to use the applet or the application? >> Q: Will this be fairly "standard" functions, or something you definitely >> need to generate yourself? >> >> On Wed, Sep 14, 2011 at 12:09 PM, Nicholas Smith <[email protected]>wrote: >> >>> Hello, >>> >>> I'm fairly new to Jmol and have been tinkering with methods of inserting >>> isosurfaces into protein space. I've been looking into the documentation for >>> the functionXY and functionXYZ isosurface options and was wondering how to >>> accomplish a couple things: >>> >>> functionXYZ: >>> What sort of data should I fill in the returned array with? (the >>> fxyz[ni][nj][nk]) >>> Is it a potential map of sorts? What is it? >>> >>> functionXY: >>> I messed around with mainly the ni, nj, and nk arguments, and the maximum >>> values passed in for each argument is an 11. Is there a way to increase the >>> grid space that the function is graphed over, or is this the maximum >>> distance? >>> >>> This is the documentation I've been going off of: >>> http://chemapps.stolaf.edu/jmol/docs/#isosurface >>> If there's a better source let me know. >>> >>> I would appreciate any suggestions, >>> Nick Smith >>> >>> ------------------------------------------------------------------------------ >>> BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA >>> Learn about the latest advances in developing for the >>> BlackBerry® mobile platform with sessions, labs & more. >>> See new tools and technologies. Register for BlackBerry® DevCon >>> today! >>> http://p.sf.net/sfu/rim-devcon-copy1 >>> _______________________________________________ >>> Jmol-users mailing list >>> [email protected] >>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>> >>> >> >> >> -- >> Robert M. Hanson >> Professor of Chemistry >> St. Olaf College >> 1520 St. Olaf Ave. >> Northfield, MN 55057 >> http://www.stolaf.edu/people/hansonr >> phone: 507-786-3107 >> >> >> If nature does not answer first what we want, >> it is better to take what answer we get. >> >> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >> >> >> ------------------------------------------------------------------------------ >> BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA >> Learn about the latest advances in developing for the >> BlackBerry® mobile platform with sessions, labs & more. >> See new tools and technologies. Register for BlackBerry® DevCon today! >> http://p.sf.net/sfu/rim-devcon-copy1 >> _______________________________________________ >> Jmol-users mailing list >> [email protected] >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> > > > ------------------------------------------------------------------------------ > BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA > Learn about the latest advances in developing for the > BlackBerry® mobile platform with sessions, labs & more. > See new tools and technologies. Register for BlackBerry® DevCon today! > http://p.sf.net/sfu/rim-devcon-copy1 > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Professor of Chemistry St. Olaf College 1520 St. Olaf Ave. Northfield, MN 55057 http://www.stolaf.edu/people/hansonr phone: 507-786-3107 If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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