Well, how is the functionxyz supposed to be used? What is the ideal scenario for it? I haven't found any well-done examples after a couple google searches.
On Sep 14, 2011, at 2:12 PM, Robert Hanson <[email protected]> wrote: > There might be easier ways to do this than functions, then. spheres are > simple; cones are basically simple functions; parallelpipeds are just planes. > So I think the only function you need there is for the cones. Something like > this: > > isosurface cone1 color gray color translucent 5 functionxy = > "-0.71*(x**2+y**2)**.5" > > > > On Wed, Sep 14, 2011 at 12:43 PM, Nicholas Smith <[email protected]> wrote: > I am planning on using the applet and will be attempting to generate fairly > "standard" objects such as spheres, cones, parallelepipeds, etc. Mostly > geometric objects. It should not be a completely irregular object. > > > On Wed, Sep 14, 2011 at 1:20 PM, Robert Hanson <[email protected]> wrote: > I realize there is not a lot there on that, and some of it has recently > changed. > > Q: Are you planning to use the applet or the application? > Q: Will this be fairly "standard" functions, or something you definitely need > to generate yourself? > > On Wed, Sep 14, 2011 at 12:09 PM, Nicholas Smith <[email protected]> wrote: > Hello, > > I'm fairly new to Jmol and have been tinkering with methods of inserting > isosurfaces into protein space. I've been looking into the documentation for > the functionXY and functionXYZ isosurface options and was wondering how to > accomplish a couple things: > > functionXYZ: > What sort of data should I fill in the returned array with? (the > fxyz[ni][nj][nk]) > Is it a potential map of sorts? What is it? > > functionXY: > I messed around with mainly the ni, nj, and nk arguments, and the maximum > values passed in for each argument is an 11. Is there a way to increase the > grid space that the function is graphed over, or is this the maximum > distance? > > This is the documentation I've been going off of: > http://chemapps.stolaf.edu/jmol/docs/#isosurface > If there's a better source let me know. > > I would appreciate any suggestions, > Nick Smith > ------------------------------------------------------------------------------ > BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA > Learn about the latest advances in developing for the > BlackBerry® mobile platform with sessions, labs & more. > See new tools and technologies. Register for BlackBerry® DevCon today! > http://p.sf.net/sfu/rim-devcon-copy1 > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > > -- > Robert M. Hanson > Professor of Chemistry > St. Olaf College > 1520 St. Olaf Ave. > Northfield, MN 55057 > http://www.stolaf.edu/people/hansonr > phone: 507-786-3107 > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > ------------------------------------------------------------------------------ > BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA > Learn about the latest advances in developing for the > BlackBerry® mobile platform with sessions, labs & more. > See new tools and technologies. Register for BlackBerry® DevCon today! > http://p.sf.net/sfu/rim-devcon-copy1 > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > ------------------------------------------------------------------------------ > BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA > Learn about the latest advances in developing for the > BlackBerry® mobile platform with sessions, labs & more. > See new tools and technologies. Register for BlackBerry® DevCon today! > http://p.sf.net/sfu/rim-devcon-copy1 > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > > -- > Robert M. Hanson > Professor of Chemistry > St. Olaf College > 1520 St. Olaf Ave. > Northfield, MN 55057 > http://www.stolaf.edu/people/hansonr > phone: 507-786-3107 > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > ------------------------------------------------------------------------------ > BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA > Learn about the latest advances in developing for the > BlackBerry® mobile platform with sessions, labs & more. > See new tools and technologies. Register for BlackBerry® DevCon today! > http://p.sf.net/sfu/rim-devcon-copy1 > _______________________________________________ > Jmol-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/jmol-users
------------------------------------------------------------------------------ BlackBerry® DevCon Americas, Oct. 18-20, San Francisco, CA Learn about the latest advances in developing for the BlackBerry® mobile platform with sessions, labs & more. See new tools and technologies. Register for BlackBerry® DevCon today! http://p.sf.net/sfu/rim-devcon-copy1
_______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
