Yes, there's something about that model and several others that the
ChemDoodle CIF interpreter doesn't like. Kevin Theisen is looking into it.
On Fri, Apr 13, 2012 at 11:17 AM, Jeff Hansen <[email protected]> wrote:
> That is correct Bob. Just press Enter in Safari and it loads the
> molecule. I did have problems with the load
> sebi0105c.ccdc.cif<http://chemapps.stolaf.edu/jmol/chemdoodle/test2.htm?CD>
> link. It worked via Jmol but not ChemDoodle. Just gave a blank box.
> All on my MacBook Pro using Safari. Haven't tried any other configuration.
>
>
> ***********************************************
> Jeff Hansen
> Department of Chemistry and Biochemistry
> DePauw University
> 602 S. College Ave.
> Greencastle, IN 46135
> [email protected]
> ***********************************************
>
>
> On Apr 13, 2012, at 10:43 AM, Robert Hanson wrote:
>
> Phil -- the OK prompt is just some debugging I left in so that Kevin could
> quickly see what sort of files we were dealing with that were causing
> problems in ChemDoodle. Nothing more than that. I think it's any time
> ChemDoodle is loading a model in its 2D mode. Can't you just press ENTER
> and have that Safari box disappear? I would have thought the OK button had
> the focus at that point, even if you can't see it. Well, anyway -- you're
> probably done playing. Other Mac users with computers that do not have
> WebGL beware!
>
> Bob
>
> On Fri, Apr 13, 2012 at 5:19 AM, Philip Bays <[email protected]> wrote:
>
>> Bob:
>>
>> I like what you are doing here. I realize that I am looking at only
>> test2, but I am playing like a student -- randomly clicking links:-) I am
>> out of town and only have my MacBook pro with me. I note in Firefox that
>> when you are in the chemdoodle mode and you try to load a file that
>> chemdoodle cannot read, you get a listing of the file with an "OK" button
>> at the bottom to dismiss the pop-up. However, in Safari, that pop-up is
>> so long, and with no way to get to the bottom, you cannot get to that
>> button. You can quit Safari, but the popup remains (and in fact Safari
>> does not quit, though the model display screen does.) You have to do a
>> force quit to get it to go away.
>>
>> The chemdoodle approach works on my old iPod touch though for those files
>> that it can read:-)
>>
>> Phil
>>
>> On Apr 13, 2012, at 1:03 AM, Robert Hanson wrote:
>>
>> OK. Please test!
>>
>> http://chemapps.stolaf.edu/jmol/chemdoodle/test2.htm
>>
>> -- adds loading of host-local file using
>>
>> MolGrabberJmol.loadFile(fileName,loadParams)
>>
>> of course, the loadParams business doesn't work with ChemDoodle, but
>> perhaps it will supply reason to add such :)
>>
>> I notice that this does not work for machine-local (hard-drive-based)
>> files in Chrome. I'm guessing that's a security setting.
>>
>> Also, actually, I couldn't get most of these to load into ChemDoodle. The
>> CIF files seem to be unreadable in all cases, and when there is no WebGL,
>> only MOL files are readable, not XYZ, PDB, or CIF.
>>
>> Kevin, now you have something to do! I'm hoping you can check that over
>> and tell me what I'm doing wrong (actually, send me a corrected
>> JmolCD.js!). Something odd in xxxInterpreters, I think. But I don't know
>> what it would be.
>>
>> Bob
>>
>>
>> --
>> Robert M. Hanson
>> Professor of Chemistry
>> St. Olaf College
>> 1520 St. Olaf Ave.
>> Northfield, MN 55057
>> http://www.stolaf.edu/people/hansonr
>> phone: 507-786-3107
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>
>> ------------------------------------------------------------------------------
>> For Developers, A Lot Can Happen In A Second.
>> Boundary is the first to Know...and Tell You.
>> Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
>>
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>>
>> J. Philip Bays
>> Emeritus Professor of Chemistry
>> Department of Chemistry and Physics
>> Saint Mary's College
>> Notre Dame, IN 46556
>> [email protected]
>>
>>
>>
>>
>>
>>
>>
>> ------------------------------------------------------------------------------
>> For Developers, A Lot Can Happen In A Second.
>> Boundary is the first to Know...and Tell You.
>> Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
>> http://p.sf.net/sfu/Boundary-d2dvs2
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>>
>
>
>
>
>
> ------------------------------------------------------------------------------
> For Developers, A Lot Can Happen In A Second.
> Boundary is the first to Know...and Tell You.
> Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
> http://p.sf.net/sfu/Boundary-d2dvs2
> _______________________________________________
> Jmol-users mailing list
> [email protected]
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
For Developers, A Lot Can Happen In A Second.
Boundary is the first to Know...and Tell You.
Monitor Your Applications in Ultra-Fine Resolution. Try it FREE!
http://p.sf.net/sfu/Boundary-d2dvs2
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