On Mon, Mar 11, 2013 at 12:40 PM, Pshemak Maslak <p...@chem.psu.edu
<mailto:p...@chem.psu.edu>> wrote:
On 3/11/2013 12:58 PM, Robert Hanson wrote:
Good catch, Michael. Yes, it's specifically a problem with
"-sp3d" -- easily fixed.
See http://chemapps.stolaf.edu/jmol/Jmol-13.zip and
http://chemapps.stolaf.edu/jmol/jsmol.zip
Bob
I have lcaocartoon-related questions. For CO2 (for example)
the sp2 lone pair lobes are shown as the sp lobes instead.
Similar outcome is observed for other linear molecules. Is
that a general limitation?
I know that the cartoons lobes can be drawn and oriented
(per demand) using "isosurface" command, but the lonepair
dots are much harder if one wants them to keep up with
molecular rotations and not eclipse each other at some
orientations.
Is there a simple way to deal with these issues?
Thanks,
PM
On Sun, Mar 10, 2013 at 2:19 PM, Michael Evans
<evan...@illinois.edu <mailto:evan...@illinois.edu>> wrote:
Jmol'ers,
I am having trouble using lcaocartoon in a very specific
case. If you look on this page, the antibonding orbitals
render fine:
http://butane.chem.illinois.edu/jsmoore/Experimental/DFE.html
However, on this updated version of the same page using
either JSmol or Jmol 13.0.12, the last antibonding
orbitals (C3-H6 and C2-H8) fail to render properly.
http://www.metallacycle.com/lec/chem332/jmolpages/difluoroethane/?use=java
Those last antibonding orbitals use the "-sp3d" lobe,
which appears not to render properly no matter what I
try. I even tried back here with no success:
http://chemapps.stolaf.edu/jmol/docs/examples-12/new.htm
An sp3d lobe renders fine, but nothing happens when I
try lcaocartoon create "-sp3d". Am I missing something?
Cheers, Mike
---
Michael Evans
Department of Chemistry
University of Illinois, Urbana-Champaign
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Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester
Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the
endpoint security space. For insight on selecting the right partner to
tackle endpoint security challenges, access the full report.
http://p.sf.net/sfu/symantec-dev2dev
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Symantec Endpoint Protection 12 positioned as A LEADER in The
Forrester
Wave(TM): Endpoint Security, Q1 2013 and "remains a good
choice" in the
endpoint security space. For insight on selecting the right
partner to
tackle endpoint security challenges, access the full report.
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Chair, Chemistry Department
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
------------------------------------------------------------------------------
Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester
Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the
endpoint security space. For insight on selecting the right partner to
tackle endpoint security challenges, access the full report.
http://p.sf.net/sfu/symantec-dev2dev
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