Hi Bob,
What is the syntax for placing JSmol commands such as:
Jmol.script(jmolApplet0,'select *;cartoons off;wireframe -0.1')
and
Jmol.loadFile(jmolApplet0,'=1blu',';display not water;select protein or
nucleic;cartoons only;color structure;select *')">
inside a regular javascript. For example:
<script type="text/javascript">
function pdb {
// invoke Jmol command
}
</script>
<button onClick="pdb();">Click Here</button>
Thanks!
Amjad
On Sun, Sep 8, 2013 at 5:36 PM, Amjad Farooq <[email protected]> wrote:
> Bob,
>
> As you advised, I added the "set the platformSpeed 1" line to the applet
> when loading PDB file. It improved the speed considerably to a level that I
> am very happy with. But, I still believe, JSmol somewhat suffers from the
> speed issue and Jmol is noticeably much more smoother when moving
> structures around with your mouse.
>
> What is the long-term goal? Is JSmol eventually going to replace Jmol? Is
> the future about having an app that does not rely on an external Java
> plugin?
>
> Just some thoughts.
>
> Thank you!
> Amjad
>
>
>
>
> On Sun, Sep 8, 2013 at 4:46 PM, Amjad Farooq <[email protected]> wrote:
>
>> Bob,
>>
>> I tried JSmol on both firefox 23 and chrome under both Fedora 15 and
>> Windows 7. In all cases, JSmol appeared to be much much slower than Jmol.
>>
>> How and where do I set the platform speed? Please advise accordingly.
>>
>> Thank you,
>> Amjad
>>
>>
>>
>>
>>
>>
>> On Sun, Sep 8, 2013 at 4:02 PM, Robert Hanson <[email protected]> wrote:
>>
>>> This is on what platform?
>>> Did you use
>>>
>>> set platformSpeed 1?
>>>
>>> Bob
>>>
>>>
>>> On Sun, Sep 8, 2013 at 1:51 PM, Amjad Farooq <[email protected]> wrote:
>>>
>>>> Hi Bob,
>>>>
>>>> Just to let you know that I tried the new version of JSmol.
>>>>
>>>> JSmol runs very slow when viewing proteins compared to Jmol. So, in
>>>> short, JSmol is cool if one can do all this without the need for an
>>>> external Java but the slow speed of JSmol is a big deterrent to using it in
>>>> everyday work and embedding it in an online web interface to showcase your
>>>> work.
>>>>
>>>> Just some feedback so that it can help you fine tune it further.
>>>>
>>>> Thank you for all your time and effort. We appreciate that very much.
>>>>
>>>> Regards,
>>>> Amjad
>>>>
>>>>
>>>> ***************************************************************************************************************************************************
>>>> *AMJAD FAROOQ PhD DIC | Associate Professor*
>>>> Dept of Biochemistry & Molecular Biology | Miller School of Medicine |
>>>> University of Miami | Miami | FL 33136
>>>> Located @ Gautier Building #217 | Mail @ 1011 NW 15th Street #217,
>>>> Miami , FL 33136
>>>> [email protected] | off 305-243-2429 | lab 305-243-9799 | fax
>>>> 305-243-3955 | www.farooqlab.net
>>>>
>>>> ***************************************************************************************************************************************************
>>>>
>>>>
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>>>>
>>>
>>>
>>> --
>>> Robert M. Hanson
>>> Larson-Anderson Professor of Chemistry
>>> St. Olaf College
>>> Northfield, MN
>>> http://www.stolaf.edu/people/hansonr
>>>
>>>
>>> If nature does not answer first what we want,
>>> it is better to take what answer we get.
>>>
>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>
>>>
>>>
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>>> Learn the latest--Visual Studio 2012, SharePoint 2013, SQL 2012, more!
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>>>
>>
>
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tutorial videos with LearnDevNow. Subscribe today and save!
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