I wish I could make more sense on all of this, but there is a certain random
quality to the errors. For what it's worth, here is one report on bond picking
error:
script ERROR: TypeError: 'undefined' is not an object (evaluating
'this.parameterExpression(a,b,null,!0,!1,-1,!1,
null,null).booleanValue')
This error came up when I click a bond. An alert screen should have come up if
the pickcallback function was called, but the alert never appeared.
Otis
--
Otis Rothenberger
[email protected]
http://chemagic.com
On Nov 2, 2013, at 8:55 PM, Otis Rothenberger <[email protected]> wrote:
> Thanks Bob, but I'm sorry to report that there are more problems. I'm
> hesitant to report problems with the new Safari under the new Apple OS
> because so many things are broken in my application when I use the latest
> version of JSmol in the app with Safari. Many of these problems do not exist
> with Chrome and FF, so its most likely something in my code that Safari does
> not like under the latest JSmol version.
>
> However the version that you posted below seems to have a problem across
> browsers. Specifically, pickcallback works on the default model, but if I do
> an edit or load another model, I seem to lose pickcallback. I'm sticking
> alert screens at various places to check this out, so you may see alert
> screens listing callback arguments if you check this.
>
> My gut tells me that my Safari issues could be related to the bind/unbind
> changes. I really need to pull these out one by one to see if that's the
> Safari issue. As to the new problem, I'm guessing it's related to your atomno
> changes.
>
> Otis
>
>
>
>
> --
> Otis Rothenberger
> [email protected]
> http://chemagic.com
>
>
>
>
> On Nov 2, 2013, at 7:44 PM, Robert Hanson <[email protected]> wrote:
>
>> Good job, Otis!!! Yes, I stand corrected. Specifically when the file format
>> (MOL in this case, but not V3000) does not declare an atom number, and when
>> appending within the same model using set appendnew FALSE, atom numbers are
>> simply incremented from what are already present. I introduced a bug in Jmol
>> 13.3.6 in Sept when I was fixing the V3000 reader to allow more interesting
>> bonding patterns after the ACS meeting.
>>
>> http://chemapps.stolaf.edu/jmol/zip/jmol-13.3.9_2013.11.02b.zip
>>
>> Bob
>>
>>
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