Hi Michael I don't know why reloading would make any difference for the effect of subsequent commands.
In any case, for best results you should follow PDB format conventions. > load data "model x" |1206|testM Those first two lines are not valid as PDB format. You should prepend them with REMARK, if you want them at all. > end "model x"; show data ; Load ; wireframe off ; spacefill off ; Indeed, there is no need for "show data" - that will just output to the (hidden) console and does not affect the model display. > Note that truncated pdb lines of type "CA 0.621 15.543 16.081" > works, but the two letter protein codes (C vs CA vs CB vs CG) are not > interpreted correctly. They must be at certain column positions to be correctly read as atom names. That is, you need the line to start with ATOM and then aton name at columns 13-16. http://www.wwpdb.org/documentation/format32/sect9.html#ATOM Otherwise, Jmol may be reading the data as XYZ format. · Dr. Angel Herráez Biochemistry and Molecular Biology, Dept. of Systems Biology, University of Alcalá E-28871 Alcalá de Henares (Madrid), Spain ------------------------------------------------------------------------------ Want excitement? Manually upgrade your production database. When you want reliability, choose Perforce. Perforce version control. Predictably reliable. http://pubads.g.doubleclick.net/gampad/clk?id=157508191&iu=/4140/ostg.clktrk _______________________________________________ Jmol-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/jmol-users
