Hi Josep, I've done this in r23358, the resultant kars are now written into KeplerData/workflow-runs/. Hope this helps.
Derik On Mar 15, 2010, at 2:25 PM, Derik Barseghian wrote: > Hi Josep, > > As a stopgap I'll implement the automatic writing of these run KARs > to disk in KeplerData/ for you in trunk (not 2.0), it shouldn't be > too hard. > > Derik > > On Mar 15, 2010, at 2:00 PM, Derik Barseghian wrote: > >> I believe how it works right now is that if you're not uploading to >> the repository, no KAR is generated. Reporting artifacts are >> serialized to disk, but as temporary files that get deleted on exit >> (this is easily changed by removing deleteOnExit calls in >> ReportingListener writeFiles()). >> >> If you are uploading to a repository, in addition to the temporary >> reporting artifacts, a temporary KAR is generated that is uploaded, >> and then also deleted on exit. >> >> I agree with Chad's email in the other thread that we should expand >> command line control capabilities, and that it should be up to the >> user if and where they want to serialize their results. And we >> should definitely allow the generation of resultant KARs to disk >> without upload. Chad's entered an enhancement request that we can >> work on: >> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4883 >> >> Derik >> >> >> On Mar 15, 2010, at 11:52 AM, Josep Morer Mu?oz wrote: >> >>> I agree with you Matt. In my case, it will be enough if I can get >>> the run KAR and store it in the filesystem. >>> >>> Is there any way to get the run KAR without the GUI? As I >>> understand it is not implemented yet. >>> >>> Thanks >>> >>> On 15 March 2010 19:28, Matt Jones <jones at nceas.ucsb.edu> wrote: >>> Seems to me that it should go in KeplerData, under whichever local >>> file system repository has been configured for KAR outputs. I had >>> been under the impression that this was already the case, but >>> maybe I'm mistaken. Aaron or Derik can probably clarify. >>> >>> Matt >>> >>> >>> 2010/3/15 ben leinfelder <leinfelder at nceas.ucsb.edu> >>> Josep, >>> You raise a good point - when running from the command line >>> script, the "products" of the KAR execution are not made available >>> - at least not in a direct way. We've been building the command >>> line feature so that the results of the KAR/workflow run (i.e. the >>> report) would be packaged in a "run KAR" along with the workflow >>> and report layout and that KAR would be uploaded to a remote >>> repository along with some metadata that described the content of >>> the run KAR. >>> In your case, you just want the run KAR to be available on your >>> local filesystem. >>> Do you have suggestions as to where the run KAR should be placed >>> once execution has wrapped up and the KAR is built? >>> -ben >>> >>> >>> On Mar 15, 2010, at 10:58 AM, Josep Morer Mu?oz wrote: >>> >>> Thanks Ben. >>> >>> I have been switched to wrp suite and it seems it works. Now, >>> using the workflow run manager, I can save the KAR which contains >>> a PDF that is generated using the run selected. >>> >>> However, I would like to generate this PDF for every run that is >>> executed using "kepler.sh workflow.kar -runwf -nogui". When I save >>> a KAR, it only contains the workflow and the report layout. If I >>> execute it, neither the workflow run XML nor the PDF file, >>> appeared in the KAR. When are they generated? I am trying to >>> automatize all the process using the command line execution and >>> extract the PDF from the KAR (or whatever place is generated). >>> >>> Thanks for your help >>> >>> >>> >>> 2010/3/15 ben leinfelder <leinfelder at nceas.ucsb.edu> >>> Josep - >>> Please use the 'wrp' suite instead of the 'reporting' module. >>> Thanks, >>> -ben >>> >>> >>> On Mar 13, 2010, at 3:53 AM, Josep Morer Mu?oz wrote: >>> >>> I have updated kepler using "ant update" and I have noticed that >>> reporting designer view has disappeared. It has been moved into >>> another module or something similar? >>> >>> I have downloaded all project another time using this following >>> commads: >>> >>> mkdir KeplerLast >>> cd KeplerLast >>> svn co https://code.kepler-project.org/code/kepler/trunk/modules/build-area >>> cd build-area >>> >>> ant change-to -Dsuite=reporting >>> >>> Now, it seems that when I execute kepler.sh, the reporting module >>> is initialized but no reporting designer view appears in the GUI. >>> >>> urops at urops-laptop:~/KeplerLast$ ./kepler.sh >>> [null] /home/urops/KeplerLast >>> [null] Found OS Extension file: /home/urops/KeplerLast/apple- >>> extensions/module-info/osextension.txt >>> [null] Building Kars... >>> [null] Ran additional initialization for module gui from class >>> org.kepler.module.gui.Initialize >>> [null] Ran additional initialization for module tagging from >>> class org.kepler.module.tagging.Initialize >>> [null] Ran additional initialization for module provenance from >>> class org.kepler.module.provenance.Initialize >>> [null] common tabpane configuration overridden by reporting >>> [null] Ran additional initialization for module reporting from >>> class org.kepler.module.reporting.Initialize >>> [null] /usr/share/themes/Human/gtk-2.0/gtkrc:51: error: lexical >>> error or unexpected token, expected valid token >>> [null] Kepler Initializing... >>> [null] *** Attempting to get ResourceBundle for SVG defaults *** >>> [null] *** svgRenderingMethod = SVG_BATIK_RENDERING *** >>> >>> >>> I am probably missing something... Could you help me? >>> >>> -- >>> Josep >>> _______________________________________________ >>> Kepler-users mailing list >>> Kepler-users at kepler-project.org >>> http://mercury.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users >>> >>> >>> >>> >>> -- >>> Josep >>> >>> _______________________________________________ >>> Kepler-users mailing list >>> Kepler-users at kepler-project.org >>> http://mercury.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users >>> >>> >>> >>> >>> -- >>> Josep >>> _______________________________________________ >>> Kepler-users mailing list >>> Kepler-users at kepler-project.org >>> http://mercury.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users >> >> ---------- >> Derik Barseghian >> http://nceas.ucsb.edu/ecoinfo | office: 805-893-5127 >> Rm 3411, Marine Science Research Building, UCSB >> Santa Barbara, CA, 93106-6150 >> >> _______________________________________________ >> Kepler-users mailing list >> Kepler-users at kepler-project.org >> http://mercury.nceas.ucsb.edu/kepler/mailman/listinfo/kepler-users >
