Had to add some verbiage to the Section header and an EndFrame to close it off,
but after that it compiled fine for me (this time on my laptop, Mint Helena
w/TeXLive 2007, beamer 3.07, hyperref 6.75r).  I see Julien also got it to
compile.  I'm pasting in the hacked version below if you want to try it on your
end. (Check that the somewhat challenged web interface to GMANE didn't screw up
the address of your logo file.)

/Paul

#LyX 1.6.4 created this file. For more info see http://www.lyx.org/
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\begin_document
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\textclass beamer
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\usecolortheme{crane}
\setbeamercovered{transparent}
%\hypersetup{bookmarksopen=false,pdfpagemode=FullScreen}
\usepackage{graphicx,relsize}
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\options handout
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\author "" 
\author "" 
\end_header

\begin_body

\begin_layout Title
Environmental Decision-Making and Risk Management
\end_layout

\begin_layout Subtitle
A New Paradigm
\end_layout

\begin_layout Author

\size small
Richard B.
 Shepard, Ph.D.
\begin_inset Newline newline
\end_inset

Applied Ecosystem Services, Inc.
\begin_inset Newline newline
\end_inset

Troutdale, OR
\size default

\begin_inset Newline newline
\end_inset


\size scriptsize
(Copyright 
\begin_inset ERT
status collapsed

\begin_layout Plain Layout


\backslash
copyright
\end_layout

\end_inset

 200
\noun on
7
\noun default
 
\noun on
Applied Ecosystem Services, Inc
\noun default
.)
\end_layout

\begin_layout Standard
\begin_inset ERT
status open

\begin_layout Plain Layout


\backslash
pgfdeclareimage[height=0.5cm]{institution-logo}{/home/rshepard/data/wpdocs
/slide-presentations/aesi-logo}
\end_layout

\begin_layout Plain Layout

\end_layout

\begin_layout Plain Layout


\backslash
logo{
\backslash
pgfuseimage{institution-logo}}
\end_layout

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status open

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%
\backslash
beamerdefaultoverlayspecification{<+->}
\end_layout

\end_inset


\end_layout

\begin_layout Section
Pointless Section
\end_layout

\begin_layout EndFrame

\end_layout

\end_body
\end_document

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