Hi all, I test Biomart .5 over Chado. I installed Chado following http://gmod.cvs.sourceforge.net/*checkout*/gmod/schema/chado/INSTALL.Chado without problems. I loaded into Chado ftp://ftp.yeastgenome.org/pub/yeast/data_download/chromosomal_feature/saccharomyces_cerevisiae.gff sample. My database is sgdlite. I created with MartBuilder a Schema about sgdlite and I created a Dataset with only feature table of schema Chado of sgdlite database. I created SQL script and I runned the SQL script. I had problem about "No space left on device". I checked free disk space for script running and I discovered that when the script creates one relation, it uses over 20Gb so it keeps busy all free disk space.. I don't think it is normal, so I suppose that I mistake when I create the dataset.. I would to create one dataset that it allows me to ask biomart complex query about sgdlite database. Complex query about genes, annotation, ontologies, and other element that I will load in the feature table. But I don't understand how to create dataset..
Can someone help me? Thanks very much for the help in advance. Alessandra.
