Hi, We are trying to have biomart working with apache. We managed to have the service running on our webserver (in fact we can access MSD PROTOTYPE (EBI UK) mart) but we cannot configure the service to use our own mart.
We created the myRegistry.xml file as specified in the biomart documentation and then run the following command: perl bin/configure.pl -r conf/myRegistry.xml This is what we get: Do you want to install in API only mode [y/n] [n]: n Checking prerequisites ...[Looks good] APACHE: /usr/sbin/apache2 HOST: localhost PORT: 5555 PROXY: LOCATION: /home/jenny/biomart/biomart-perl APXS/2: /usr/bin/apxs2 You can change the above configuration by editing "biomart-perl/conf/settings.conf" Got usable Apache in /usr/sbin/apache2, probing for version & ModPerl configuration Have Apache DSO-support and ModPerl library file present, configuring ModPerl in httpd.conf. Libdir /home/jenny/biomart/biomart-perl/lib is not in @INC, adding to @INC Processing Cached Registry: /home/jenny/biomart/biomart-perl/conf/cachedRegistries/myRegistry.xml.cached Since we do not get the message (Looks good.... you are done.) we reckon something goes wrong at this stage, any ideas what this might be? Our mart is not appearing on the interface. Thanks, Jenny and Luca
