Hi guys, Please send us your registry file so we can double check if it is ok
Cheers, A. On 24/04/09 12:11 PM, "Mead, Jennifer" <[email protected]> wrote: > Hi, > > We are trying to have biomart working with apache. We managed to have the > service running on our webserver (in fact we can access MSD PROTOTYPE (EBI UK) > mart) but we cannot configure the service to use our own mart. > > We created the myRegistry.xml file as specified in the biomart documentation > and then run the following command: > > perl bin/configure.pl -r conf/myRegistry.xml > > > This is what we get: > > > Do you want to install in API only mode [y/n] [n]: n > > Checking prerequisites ...[Looks good] > > APACHE: /usr/sbin/apache2 > HOST: localhost > PORT: 5555 > PROXY: > LOCATION: /home/jenny/biomart/biomart-perl > APXS/2: /usr/bin/apxs2 > > You can change the above configuration by editing > "biomart-perl/conf/settings.conf" > > > > Got usable Apache in /usr/sbin/apache2, probing for version & ModPerl > configuration > Have Apache DSO-support and ModPerl library file present, configuring ModPerl > in httpd.conf. > Libdir /home/jenny/biomart/biomart-perl/lib is not in @INC, adding to @INC > > Processing Cached Registry: > /home/jenny/biomart/biomart-perl/conf/cachedRegistries/myRegistry.xml.cached > > Since we do not get the message (Looks good.... you are done.) we reckon > something goes wrong at this stage, any ideas what this might be? Our mart is > not appearing on the interface. > > Thanks, > > Jenny and Luca
