Hi, I am trying to query a list of 75 RGD symbols and I am only getting a result for 58. The 17 missing ones do exist in the RGD database. HCN2 and Kcnb1 are two examples.
HCN2: http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=620689 Kcnb1: http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=2954 I also tried to use the RGD ID instead of symbol and still it could not find them. The dataset I am using is RGSC 3.4 Dataset in the ENSEMBL GENES 57 database which is the same assembly version as the one at the RGD website. I am only using ID list limit with RGD Symbol as Filters. Additionally, for the ones that are found, there is a problem with the link of the RGD symbol Attribute in the Results. For, instance when querying for Hcn1 and Kcna1 RGD Symbols I get the following URLs: http://rgd.mcw.edu/tools/genes/genes_view.cgi?symbol=Hcn1 http://rgd.mcw.edu/tools/genes/genes_view.cgi?symbol=Kcna1 Both links display Alcy (Rattus norvegicus) gene and neither Hcn1 nor Kcna1. I am not sure if this a problem with Biomart or RGD database. (RGD ID attribute works fine) I would greatly appreciate any help with this. Thank you in advance. Geoges -- Georges Khazen PhD candidate - Blue Brain Project Brain Mind Institute AAB 201 EPFL- Station 15 CH-1015 Lausanne Switzerland Tel + 41 21 693 96 49 [email protected]
