Dear Arek, Thanks a lot for your reply. I will contact them.
Best Georges On Mar 8, 2010, at 2:31 PM, Arek Kasprzyk wrote: > Dear Georges, > If I understand correctly there seems to be some sort of data discrepancy > between RGSC 3.4 dataset in Ensembl vs RGD itself. Please contact Ensembl > team directly at [email protected] and they will be able to help you more > > > a. > > > On 08/03/10 5:17 AM, "Khazen Georges" <[email protected]> wrote: > >> >> >> Hi, >> >> I am trying to query a list of 75 RGD symbols and I am only getting a result >> for 58. The 17 missing ones do exist in the RGD database. HCN2 and Kcnb1 are >> two examples. >> >> HCN2: http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=620689 >> Kcnb1: http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=2954 >> >> I also tried to use the RGD ID instead of symbol and still it could not find >> them. >> The dataset I am using is RGSC 3.4 Dataset in the ENSEMBL GENES 57 database >> which is the same assembly version as the one at the RGD website. I am only >> using ID list limit with RGD Symbol as Filters. >> >> Additionally, for the ones that are found, there is a problem with the link >> of >> the RGD symbol Attribute in the Results. For, instance when querying for Hcn1 >> and Kcna1 RGD Symbols I get the following URLs: >> http://rgd.mcw.edu/tools/genes/genes_view.cgi?symbol=Hcn1 >> http://rgd.mcw.edu/tools/genes/genes_view.cgi?symbol=Kcna1 >> >> Both links display Alcy (Rattus norvegicus) gene and neither Hcn1 nor Kcna1. >> I >> am not sure if this a problem with Biomart or RGD database. (RGD ID attribute >> works fine) >> >> I would greatly appreciate any help with this. >> >> Thank you in advance. >> >> Geoges >> >> -- >> Georges Khazen >> PhD candidate - Blue Brain Project >> Brain Mind Institute AAB 201 >> EPFL- Station 15 >> CH-1015 Lausanne >> Switzerland >> Tel + 41 21 693 96 49 >> [email protected] >> >> >> > -- Georges Khazen PhD candidate - Blue Brain Project Brain Mind Institute AAB 201 EPFL- Station 15 CH-1015 Lausanne Switzerland Tel + 41 21 693 96 49 [email protected]
