Dear Georges, If I understand correctly there seems to be some sort of data discrepancy between RGSC 3.4 dataset in Ensembl vs RGD itself. Please contact Ensembl team directly at [email protected] and they will be able to help you more
a. On 08/03/10 5:17 AM, "Khazen Georges" <[email protected]> wrote: > > > Hi, > > I am trying to query a list of 75 RGD symbols and I am only getting a result > for 58. The 17 missing ones do exist in the RGD database. HCN2 and Kcnb1 are > two examples. > > HCN2: http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=620689 > Kcnb1: http://rgd.mcw.edu/tools/genes/genes_view.cgi?id=2954 > > I also tried to use the RGD ID instead of symbol and still it could not find > them. > The dataset I am using is RGSC 3.4 Dataset in the ENSEMBL GENES 57 database > which is the same assembly version as the one at the RGD website. I am only > using ID list limit with RGD Symbol as Filters. > > Additionally, for the ones that are found, there is a problem with the link of > the RGD symbol Attribute in the Results. For, instance when querying for Hcn1 > and Kcna1 RGD Symbols I get the following URLs: > http://rgd.mcw.edu/tools/genes/genes_view.cgi?symbol=Hcn1 > http://rgd.mcw.edu/tools/genes/genes_view.cgi?symbol=Kcna1 > > Both links display Alcy (Rattus norvegicus) gene and neither Hcn1 nor Kcna1. I > am not sure if this a problem with Biomart or RGD database. (RGD ID attribute > works fine) > > I would greatly appreciate any help with this. > > Thank you in advance. > > Geoges > > -- > Georges Khazen > PhD candidate - Blue Brain Project > Brain Mind Institute AAB 201 > EPFL- Station 15 > CH-1015 Lausanne > Switzerland > Tel + 41 21 693 96 49 > [email protected] > > >
