Hi Arek, Lots of goodies on BioMart 0.8. Could you elaborate more especially on the new configuration tool please? Thank you, Nelson
> > Hi Leandro, > I'll try to dig up some more recent slides for you. Meanwhile you can have > a > first glimpse of what's coming. We have just released a website based on > the > first 0.8 candidate. > > > http://dcc.icgc.org/ > > The interface that you see there is the first one of the number of GUIs > that > we are developing for new BioMart. (Some of those will come from our > collaborators from the EBI) Some of the upcoming features (in > non-particular > order are listed below) > > 1. Other GUI types, report pages and visualization tools > 3. Parallel query processing for large datasets > 4. Security > 5. 'Virtual' marts. > (mart-compatible, non materialized views on the source schema) > 6. Multi-dataset joins > 7. New configuration tool > > The new website is still very basic but We'll be adding more features soon > > a > > > On 14/04/10 9:14 AM, "Leandro Hermida" <[email protected]> wrote: > >> Dear OICR, >> >> When you get a chance and see this message if you could direct me to any >> slides and related information you have on the upcoming release of >> BioMart, I >> am giving a workshop talk at my institute to put forward using BioMart >> for the >> data mining component of a large project we are doing and I would >> particularly >> like to know the differences between 0.7 and the upcoming version. >> Intermine >> is also being recommended as a competitor by someone else, I would >> prefer >> BioMart to be selected as I have much more experience with it and have >> successfully used it in other projects! >> >> I've finished my slides describing the current 0.7 version and credited >> Arek >> (thank you I used some of your graphics from your 2007 talks) >> >> best, >> Leandro >> >> On Wed, Apr 14, 2010 at 12:32 PM, Damian Smedley <[email protected]> >> wrote: >>> Hi Leandro, >>> >>> The folk at OICR, Toronto who are doing the majority of the development >>> will >>> definitely have some nice presentation material and should be awake in >>> a few >>> hours! Give them a while and I know they will be happy to send you some >>> powerpoints etc. I have some slides etc but their materials will be >>> more up >>> to >>> date on the upcoming release. >>> >>> Best wishes >>> Damian >>> >>> >>> >>> On Wed, Apr 14, 2010 at 10:58 AM, Leandro Hermida >>> <[email protected]> >>> wrote: >>>> Hello, >>>> >>>> Thanks for the heads up on the new version, are there any slides that >>>> anyone >>>> at the EBI team might have which I can throw in at the end of my talk >>>> showing >>>> some screenshots of the new upcoming version? >>>> >>>> thanks, >>>> Leandro >>>> >>>> >>>> >>>> On Wed, Apr 14, 2010 at 11:55 AM, Richard Holland >>>> <[email protected]> >>>> wrote: >>>>> Nothing significant has changed in the user interface since 2007 so >>>>> all of >>>>> Arek's material relating to it from that year is still up-to-date. >>>>> >>>>> However a brand new BioMart is due sometime soon which will >>>>> completely >>>>> change the user interface. I'm not sure when it's due out but it >>>>> would be >>>>> worth checking in order to make sure that your presentation doesn't >>>>> have to >>>>> be re-written/repeated unnecessarily. A demo was presented at an EBI >>>>> web >>>>> services workshop in February so it can't be far away. >>>>> >>>>> cheers, >>>>> Richard >>>>> >>>>> On 14 Apr 2010, at 10:34, Leandro Hermida wrote: >>>>> >>>>>>> Hi BioMart team, >>>>>>> >>>>>>> I have been preparing a workshop talk to introduce our users to >>>>>>> BioMart >>>>>> and show how we can use for the data mining component of a large >>>>>> project >>>>>> we >>>>>> are implementing. I don't want to reinvent the wheel and was >>>>>> wondering if >>>>>> there are some more up-to-date talks/slides that I could incorporate >>>>>> into >>>>>> my presentation? I've looked in http://www.ebi.ac.uk/~arek/talks/ >>>>>> <http://www.ebi.ac.uk/%7Earek/talks/> which has talks from 2007 and >>>>>> earlier. >>>>>>> >>>>>>> thanks for any help, >>>>>>> Leandro >>>>>>> >>>>> >>>>> -- >>>>> Richard Holland, BSc MBCS >>>>> Operations and Delivery Director, Eagle Genomics Ltd >>>>> T: +44 (0)1223 654481 ext 3 | E: [email protected] >>>>> http://www.eaglegenomics.com/ >>>>> >>>> >>> >> >
