On 14/04/10 4:00 PM, "[email protected]" <[email protected]> wrote:
> Hi Arek,
> Lots of goodies on BioMart 0.8. Could you elaborate more especially on the
> new configuration tool please?
All I can say right now is that will be doing what Meditor and Mbuilder do
at the moment with a specific focus on the portal support rather than single
dataset as it used to be. This is still work in progress
a
> Thank you,
> Nelson
>
>>
>> Hi Leandro,
>> I'll try to dig up some more recent slides for you. Meanwhile you can have
>> a
>> first glimpse of what's coming. We have just released a website based on
>> the
>> first 0.8 candidate.
>>
>>
>> http://dcc.icgc.org/
>>
>> The interface that you see there is the first one of the number of GUIs
>> that
>> we are developing for new BioMart. (Some of those will come from our
>> collaborators from the EBI) Some of the upcoming features (in
>> non-particular
>> order are listed below)
>>
>> 1. Other GUI types, report pages and visualization tools
>> 3. Parallel query processing for large datasets
>> 4. Security
>> 5. 'Virtual' marts.
>> (mart-compatible, non materialized views on the source schema)
>> 6. Multi-dataset joins
>> 7. New configuration tool
>>
>> The new website is still very basic but We'll be adding more features soon
>>
>> a
>>
>>
>> On 14/04/10 9:14 AM, "Leandro Hermida" <[email protected]> wrote:
>>
>>> Dear OICR,
>>>
>>> When you get a chance and see this message if you could direct me to any
>>> slides and related information you have on the upcoming release of
>>> BioMart, I
>>> am giving a workshop talk at my institute to put forward using BioMart
>>> for the
>>> data mining component of a large project we are doing and I would
>>> particularly
>>> like to know the differences between 0.7 and the upcoming version.
>>> Intermine
>>> is also being recommended as a competitor by someone else, I would
>>> prefer
>>> BioMart to be selected as I have much more experience with it and have
>>> successfully used it in other projects!
>>>
>>> I've finished my slides describing the current 0.7 version and credited
>>> Arek
>>> (thank you I used some of your graphics from your 2007 talks)
>>>
>>> best,
>>> Leandro
>>>
>>> On Wed, Apr 14, 2010 at 12:32 PM, Damian Smedley <[email protected]>
>>> wrote:
>>>> Hi Leandro,
>>>>
>>>> The folk at OICR, Toronto who are doing the majority of the development
>>>> will
>>>> definitely have some nice presentation material and should be awake in
>>>> a few
>>>> hours! Give them a while and I know they will be happy to send you some
>>>> powerpoints etc. I have some slides etc but their materials will be
>>>> more up
>>>> to
>>>> date on the upcoming release.
>>>>
>>>> Best wishes
>>>> Damian
>>>>
>>>>
>>>>
>>>> On Wed, Apr 14, 2010 at 10:58 AM, Leandro Hermida
>>>> <[email protected]>
>>>> wrote:
>>>>> Hello,
>>>>>
>>>>> Thanks for the heads up on the new version, are there any slides that
>>>>> anyone
>>>>> at the EBI team might have which I can throw in at the end of my talk
>>>>> showing
>>>>> some screenshots of the new upcoming version?
>>>>>
>>>>> thanks,
>>>>> Leandro
>>>>>
>>>>>
>>>>>
>>>>> On Wed, Apr 14, 2010 at 11:55 AM, Richard Holland
>>>>> <[email protected]>
>>>>> wrote:
>>>>>> Nothing significant has changed in the user interface since 2007 so
>>>>>> all of
>>>>>> Arek's material relating to it from that year is still up-to-date.
>>>>>>
>>>>>> However a brand new BioMart is due sometime soon which will
>>>>>> completely
>>>>>> change the user interface. I'm not sure when it's due out but it
>>>>>> would be
>>>>>> worth checking in order to make sure that your presentation doesn't
>>>>>> have to
>>>>>> be re-written/repeated unnecessarily. A demo was presented at an EBI
>>>>>> web
>>>>>> services workshop in February so it can't be far away.
>>>>>>
>>>>>> cheers,
>>>>>> Richard
>>>>>>
>>>>>> On 14 Apr 2010, at 10:34, Leandro Hermida wrote:
>>>>>>
>>>>>>>> Hi BioMart team,
>>>>>>>>
>>>>>>>> I have been preparing a workshop talk to introduce our users to
>>>>>>>> BioMart
>>>>>>> and show how we can use for the data mining component of a large
>>>>>>> project
>>>>>>> we
>>>>>>> are implementing. I don't want to reinvent the wheel and was
>>>>>>> wondering if
>>>>>>> there are some more up-to-date talks/slides that I could incorporate
>>>>>>> into
>>>>>>> my presentation? I've looked in http://www.ebi.ac.uk/~arek/talks/
>>>>>>> <http://www.ebi.ac.uk/%7Earek/talks/> which has talks from 2007 and
>>>>>>> earlier.
>>>>>>>>
>>>>>>>> thanks for any help,
>>>>>>>> Leandro
>>>>>>>>
>>>>>>
>>>>>> --
>>>>>> Richard Holland, BSc MBCS
>>>>>> Operations and Delivery Director, Eagle Genomics Ltd
>>>>>> T: +44 (0)1223 654481 ext 3 | E: [email protected]
>>>>>> http://www.eaglegenomics.com/
>>>>>>
>>>>>
>>>>
>>>
>>
>
>
