Thanks Arek I've given my talk and credited you in the presentation, would be nice to see other information you might have later for the new version but I was able to include a slide of the new features you mentioned and did some screenshots of the new GUIs
-L On Wed, Apr 14, 2010 at 10:21 PM, Arek Kasprzyk <[email protected]>wrote: > > > > On 14/04/10 4:00 PM, "[email protected]" <[email protected]> wrote: > > > Hi Arek, > > Lots of goodies on BioMart 0.8. Could you elaborate more especially on > the > > new configuration tool please? > > > All I can say right now is that will be doing what Meditor and Mbuilder do > at the moment with a specific focus on the portal support rather than > single > dataset as it used to be. This is still work in progress > > a > > > > > Thank you, > > Nelson > > > >> > >> Hi Leandro, > >> I'll try to dig up some more recent slides for you. Meanwhile you can > have > >> a > >> first glimpse of what's coming. We have just released a website based on > >> the > >> first 0.8 candidate. > >> > >> > >> http://dcc.icgc.org/ > >> > >> The interface that you see there is the first one of the number of GUIs > >> that > >> we are developing for new BioMart. (Some of those will come from our > >> collaborators from the EBI) Some of the upcoming features (in > >> non-particular > >> order are listed below) > >> > >> 1. Other GUI types, report pages and visualization tools > >> 3. Parallel query processing for large datasets > >> 4. Security > >> 5. 'Virtual' marts. > >> (mart-compatible, non materialized views on the source schema) > >> 6. Multi-dataset joins > >> 7. New configuration tool > >> > >> The new website is still very basic but We'll be adding more features > soon > >> > >> a > >> > >> > >> On 14/04/10 9:14 AM, "Leandro Hermida" <[email protected]> > wrote: > >> > >>> Dear OICR, > >>> > >>> When you get a chance and see this message if you could direct me to > any > >>> slides and related information you have on the upcoming release of > >>> BioMart, I > >>> am giving a workshop talk at my institute to put forward using BioMart > >>> for the > >>> data mining component of a large project we are doing and I would > >>> particularly > >>> like to know the differences between 0.7 and the upcoming version. > >>> Intermine > >>> is also being recommended as a competitor by someone else, I would > >>> prefer > >>> BioMart to be selected as I have much more experience with it and have > >>> successfully used it in other projects! > >>> > >>> I've finished my slides describing the current 0.7 version and credited > >>> Arek > >>> (thank you I used some of your graphics from your 2007 talks) > >>> > >>> best, > >>> Leandro > >>> > >>> On Wed, Apr 14, 2010 at 12:32 PM, Damian Smedley <[email protected]> > >>> wrote: > >>>> Hi Leandro, > >>>> > >>>> The folk at OICR, Toronto who are doing the majority of the > development > >>>> will > >>>> definitely have some nice presentation material and should be awake in > >>>> a few > >>>> hours! Give them a while and I know they will be happy to send you > some > >>>> powerpoints etc. I have some slides etc but their materials will be > >>>> more up > >>>> to > >>>> date on the upcoming release. > >>>> > >>>> Best wishes > >>>> Damian > >>>> > >>>> > >>>> > >>>> On Wed, Apr 14, 2010 at 10:58 AM, Leandro Hermida > >>>> <[email protected]> > >>>> wrote: > >>>>> Hello, > >>>>> > >>>>> Thanks for the heads up on the new version, are there any slides that > >>>>> anyone > >>>>> at the EBI team might have which I can throw in at the end of my talk > >>>>> showing > >>>>> some screenshots of the new upcoming version? > >>>>> > >>>>> thanks, > >>>>> Leandro > >>>>> > >>>>> > >>>>> > >>>>> On Wed, Apr 14, 2010 at 11:55 AM, Richard Holland > >>>>> <[email protected]> > >>>>> wrote: > >>>>>> Nothing significant has changed in the user interface since 2007 so > >>>>>> all of > >>>>>> Arek's material relating to it from that year is still up-to-date. > >>>>>> > >>>>>> However a brand new BioMart is due sometime soon which will > >>>>>> completely > >>>>>> change the user interface. I'm not sure when it's due out but it > >>>>>> would be > >>>>>> worth checking in order to make sure that your presentation doesn't > >>>>>> have to > >>>>>> be re-written/repeated unnecessarily. A demo was presented at an EBI > >>>>>> web > >>>>>> services workshop in February so it can't be far away. > >>>>>> > >>>>>> cheers, > >>>>>> Richard > >>>>>> > >>>>>> On 14 Apr 2010, at 10:34, Leandro Hermida wrote: > >>>>>> > >>>>>>>> Hi BioMart team, > >>>>>>>> > >>>>>>>> I have been preparing a workshop talk to introduce our users to > >>>>>>>> BioMart > >>>>>>> and show how we can use for the data mining component of a large > >>>>>>> project > >>>>>>> we > >>>>>>> are implementing. I don't want to reinvent the wheel and was > >>>>>>> wondering if > >>>>>>> there are some more up-to-date talks/slides that I could > incorporate > >>>>>>> into > >>>>>>> my presentation? I've looked in > >>>>>>> http://www.ebi.ac.uk/~arek/talks/<http://www.ebi.ac.uk/%7Earek/talks/> > >>>>>>> <http://www.ebi.ac.uk/%7Earek/talks/> which has talks from 2007 > and > >>>>>>> earlier. > >>>>>>>> > >>>>>>>> thanks for any help, > >>>>>>>> Leandro > >>>>>>>> > >>>>>> > >>>>>> -- > >>>>>> Richard Holland, BSc MBCS > >>>>>> Operations and Delivery Director, Eagle Genomics Ltd > >>>>>> T: +44 (0)1223 654481 ext 3 | E: [email protected] > >>>>>> http://www.eaglegenomics.com/ > >>>>>> > >>>>> > >>>> > >>> > >> > > > > > >
