Hello,
I am getting an error very similar to the one that Lance Palmer had in
April. The mauve console log is attached. From the advice to him, I
see that
'the error message could indicate either a formatting problem in the
sequence
input files, a shortage of memory on your windows machine, or a bug in
Mauve.'
The sequence input files align without error with other sequences, only
this particular combination produces an error. Thus, I think the input
files are appropriately formatted.
I would greatly appreciate any help in getting this alignment running
without error.
thank you,
Sarah Cousins
Exception in thread "Thread-4" java.lang.NullPointerException
at org.gel.mauve.ModelBuilder.buildModel(ModelBuilder.java:250)
at org.gel.mauve.gui.FrameLoader.loadFile(FrameLoader.java:94)
at org.gel.mauve.gui.FrameLoader.run(FrameLoader.java:55)
at java.lang.Thread.run(Unknown Source)
OS name is: Windows XP
Executing:
mauveAligner --output=C:\Documents and Settings\cousinss\My documents\bsuis
mauve\13311-ATCC2.mln --island-size=50 --island-output=C:\Documents and
Settings\cousinss\My documents\bsuis mauve\13311-ATCC2.mln.islands
--backbone-size=50 --max-backbone-gap=50 --backbone-output=C:\Documents and
Settings\cousinss\My documents\bsuis mauve\13311-ATCC2.mln.backbone
--id-matrix=C:\Documents and Settings\cousinss\My documents\bsuis
mauve\13311-ATCC2.mln.id_matrix --output-alignment=C:\Documents and
Settings\cousinss\My documents\bsuis mauve\13311-ATCC2.mln.alignment
--output-guide-tree=C:\Documents and Settings\cousinss\My documents\bsuis
mauve\13311-ATCC2.mln.guide_tree C:\Documents and Settings\cousinss\My
Documents\bsuis mauve\bsuis1331-1.txt C:\Documents and Settings\cousinss\My
Documents\bsuis mauve\bsuis1331-1.txt.sml C:\Documents and Settings\cousinss\My
Documents\bsuis mauve\bsuisATCC-2.txt C:\Documents and Settings\cousinss\My
Documents\bsuis mauve\bsuisATCC-2.txt.sml
Sequence loaded successfully.
C:\Documents and Settings\cousinss\My Documents\bsuis mauve\bsuis1331-1.txt
2107794 base pairs.
Sequence loaded successfully.
C:\Documents and Settings\cousinss\My Documents\bsuis mauve\bsuisATCC-2.txt
1400844 base pairs.
Using weight 13 mers for initial seeds
Sorted mer list loaded successfully
Sorted mer list loaded successfully
0%..1%..2%..3%..4%..5%..6%..7%..8%..9%..10%..
11%..12%..13%..14%..15%..16%..17%..18%..19%..20%..
21%..22%..23%..24%..25%..26%..27%..28%..29%..30%..
31%..32%..33%..34%..35%..36%..37%..38%..39%..40%..
41%..42%..43%..44%..45%..46%..47%..48%..49%..50%..
51%..52%..53%..54%..55%..56%..57%..58%..59%..60%..
61%..62%..63%..64%..65%..66%..67%..68%..69%..70%..
71%..72%..73%..74%..75%..76%..77%..78%..79%..80%..
81%..82%..83%..84%..85%..86%..87%..88%..89%..90%..
91%..92%..93%..94%..95%..96%..97%..98%..99%..Starting with 106806 MUMs
ELI gives 106806 MUMs
Eliminating overlaps yields 52247 MUMs
Multiplicity filter gives 52247 MUMs
The 52247 matches constitute 52235 breakpoints
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 170 matches constituting 104 LCBs covering
at least 80b.p.
Previous weight: 0 new weight: 440928
Performing LCB extension
Previous weight: 440928 new weight: 1816184
Previous weight: 1816184 new weight: 2144232
Previous weight: 2144232 new weight: 2235356
Previous weight: 2235356 new weight: 2265992
Previous weight: 2265992 new weight: 2277124
Previous weight: 2277124 new weight: 2280976
Previous weight: 2280976 new weight: 2282082
Previous weight: 2282082 new weight: 2282382
Previous weight: 2282382 new weight: 2282556
Previous weight: 2282556 new weight: 2282612
Previous weight: 2282612 new weight: 2282612
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 304 matches constituting 134 LCBs covering
at least 80b.p.
Previous weight: 440928 new weight: 450592
Performing LCB extension
Previous weight: 450592 new weight: 1800278
Previous weight: 1800278 new weight: 2121512
Previous weight: 2121512 new weight: 2210606
Previous weight: 2210606 new weight: 2240956
Previous weight: 2240956 new weight: 2251510
Previous weight: 2251510 new weight: 2255166
Previous weight: 2255166 new weight: 2256248
Previous weight: 2256248 new weight: 2256618
Previous weight: 2256618 new weight: 2256724
Previous weight: 2256724 new weight: 2256798
Previous weight: 2256798 new weight: 2256798
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 468 matches constituting 143 LCBs covering
at least 80b.p.
Previous weight: 450592 new weight: 455666
Performing LCB extension
Previous weight: 455666 new weight: 1785398
Previous weight: 1785398 new weight: 2101608
Previous weight: 2101608 new weight: 2190110
Previous weight: 2190110 new weight: 2218940
Previous weight: 2218940 new weight: 2228020
Previous weight: 2228020 new weight: 2231084
Previous weight: 2231084 new weight: 2231972
Previous weight: 2231972 new weight: 2232204
Previous weight: 2232204 new weight: 2232352
Previous weight: 2232352 new weight: 2232400
Previous weight: 2232400 new weight: 2232430
Previous weight: 2232430 new weight: 2232448
Previous weight: 2232448 new weight: 2232448
Number: 50 match 13 1141202 -885635
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 587 matches constituting 155 LCBs covering
at least 80b.p.
Previous weight: 455666 new weight: 459300
Performing LCB extension
Previous weight: 459300 new weight: 1782790
Previous weight: 1782790 new weight: 2097332
Previous weight: 2097332 new weight: 2183012
Previous weight: 2183012 new weight: 2213824
Previous weight: 2213824 new weight: 2223368
Previous weight: 2223368 new weight: 2226828
Previous weight: 2226828 new weight: 2227924
Previous weight: 2227924 new weight: 2228300
Previous weight: 2228300 new weight: 2228492
Previous weight: 2228492 new weight: 2228594
Previous weight: 2228594 new weight: 2228628
Previous weight: 2228628 new weight: 2228652
Previous weight: 2228652 new weight: 2228652
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 609 matches constituting 159 LCBs covering
at least 80b.p.
Previous weight: 459300 new weight: 460030
Performing LCB extension
Previous weight: 460030 new weight: 1780442
Previous weight: 1780442 new weight: 2093806
Previous weight: 2093806 new weight: 2178770
Previous weight: 2178770 new weight: 2207922
Previous weight: 2207922 new weight: 2216868
Previous weight: 2216868 new weight: 2220184
Previous weight: 2220184 new weight: 2221256
Previous weight: 2221256 new weight: 2221712
Previous weight: 2221712 new weight: 2221818
Previous weight: 2221818 new weight: 2221818
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 628 matches constituting 163 LCBs covering
at least 80b.p.
Previous weight: 460030 new weight: 460672
Performing LCB extension
Previous weight: 460672 new weight: 1768208
Previous weight: 1768208 new weight: 2075450
Previous weight: 2075450 new weight: 2159690
Previous weight: 2159690 new weight: 2187206
Previous weight: 2187206 new weight: 2196304
Previous weight: 2196304 new weight: 2199424
Previous weight: 2199424 new weight: 2200490
Previous weight: 2200490 new weight: 2200760
Previous weight: 2200760 new weight: 2200802
Previous weight: 2200802 new weight: 2200820
Previous weight: 2200820 new weight: 2200820
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 645 matches constituting 166 LCBs covering
at least 80b.p.
Previous weight: 460672 new weight: 461304
Performing LCB extension
Previous weight: 461304 new weight: 1763184
Previous weight: 1763184 new weight: 2068850
Previous weight: 2068850 new weight: 2152630
Previous weight: 2152630 new weight: 2179708
Previous weight: 2179708 new weight: 2188820
Previous weight: 2188820 new weight: 2191480
Previous weight: 2191480 new weight: 2192594
Previous weight: 2192594 new weight: 2192816
Previous weight: 2192816 new weight: 2192880
Previous weight: 2192880 new weight: 2192912
Previous weight: 2192912 new weight: 2192912
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 666 matches constituting 169 LCBs covering
at least 80b.p.
Previous weight: 461304 new weight: 461920
Performing LCB extension
Previous weight: 461920 new weight: 1763188
Previous weight: 1763188 new weight: 2069176
Previous weight: 2069176 new weight: 2153136
Previous weight: 2153136 new weight: 2179656
Previous weight: 2179656 new weight: 2188196
Previous weight: 2188196 new weight: 2191206
Previous weight: 2191206 new weight: 2192648
Previous weight: 2192648 new weight: 2193094
Previous weight: 2193094 new weight: 2193190
Previous weight: 2193190 new weight: 2193190
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 679 matches constituting 174 LCBs covering
at least 80b.p.
Previous weight: 461920 new weight: 462500
Performing LCB extension
Previous weight: 462500 new weight: 1755180
Previous weight: 1755180 new weight: 2058396
Previous weight: 2058396 new weight: 2141826
Previous weight: 2141826 new weight: 2170144
Previous weight: 2170144 new weight: 2179662
Previous weight: 2179662 new weight: 2182754
Previous weight: 2182754 new weight: 2183886
Previous weight: 2183886 new weight: 2184194
Previous weight: 2184194 new weight: 2184342
Previous weight: 2184342 new weight: 2184388
Previous weight: 2184388 new weight: 2184418
Previous weight: 2184418 new weight: 2184436
Previous weight: 2184436 new weight: 2184436
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 698 matches constituting 174 LCBs covering
at least 80b.p.
Previous weight: 462500 new weight: 462980
Performing LCB extension
Previous weight: 462980 new weight: 1754536
Previous weight: 1754536 new weight: 2056954
Previous weight: 2056954 new weight: 2139994
Previous weight: 2139994 new weight: 2168508
Previous weight: 2168508 new weight: 2177848
Previous weight: 2177848 new weight: 2180746
Previous weight: 2180746 new weight: 2181790
Previous weight: 2181790 new weight: 2182190
Previous weight: 2182190 new weight: 2182348
Previous weight: 2182348 new weight: 2182376
Previous weight: 2182376 new weight: 2182398
Previous weight: 2182398 new weight: 2182398
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 708 matches constituting 178 LCBs covering
at least 80b.p.
Previous weight: 462980 new weight: 463422
Performing LCB extension
Previous weight: 463422 new weight: 1747274
Previous weight: 1747274 new weight: 2046060
Previous weight: 2046060 new weight: 2127622
Previous weight: 2127622 new weight: 2154912
Previous weight: 2154912 new weight: 2164572
Previous weight: 2164572 new weight: 2167996
Previous weight: 2167996 new weight: 2169152
Previous weight: 2169152 new weight: 2169472
Previous weight: 2169472 new weight: 2169542
Previous weight: 2169542 new weight: 2169542
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 718 matches constituting 181 LCBs covering
at least 80b.p.
Previous weight: 463422 new weight: 463816
Performing LCB extension
Previous weight: 463816 new weight: 1745768
Previous weight: 1745768 new weight: 2044200
Previous weight: 2044200 new weight: 2125026
Previous weight: 2125026 new weight: 2152166
Previous weight: 2152166 new weight: 2161422
Previous weight: 2161422 new weight: 2164484
Previous weight: 2164484 new weight: 2165504
Previous weight: 2165504 new weight: 2165790
Previous weight: 2165790 new weight: 2165816
Previous weight: 2165816 new weight: 2165816
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 729 matches constituting 185 LCBs covering
at least 80b.p.
Previous weight: 463816 new weight: 464300
Performing LCB extension
Previous weight: 464300 new weight: 1743234
Previous weight: 1743234 new weight: 2040528
Previous weight: 2040528 new weight: 2120400
Previous weight: 2120400 new weight: 2147894
Previous weight: 2147894 new weight: 2157272
Previous weight: 2157272 new weight: 2159954
Previous weight: 2159954 new weight: 2161168
Previous weight: 2161168 new weight: 2161590
Previous weight: 2161590 new weight: 2161716
Previous weight: 2161716 new weight: 2161824
Previous weight: 2161824 new weight: 2161854
Previous weight: 2161854 new weight: 2161854
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 735 matches constituting 187 LCBs covering
at least 80b.p.
Previous weight: 464300 new weight: 464562
Performing LCB extension
Previous weight: 464562 new weight: 1740498
Previous weight: 1740498 new weight: 2037498
Previous weight: 2037498 new weight: 2117368
Previous weight: 2117368 new weight: 2144620
Previous weight: 2144620 new weight: 2153280
Previous weight: 2153280 new weight: 2156114
Previous weight: 2156114 new weight: 2157170
Previous weight: 2157170 new weight: 2157590
Previous weight: 2157590 new weight: 2157808
Previous weight: 2157808 new weight: 2157936
Previous weight: 2157936 new weight: 2157960
Previous weight: 2157960 new weight: 2157990
Previous weight: 2157990 new weight: 2158016
Previous weight: 2158016 new weight: 2158036
Previous weight: 2158036 new weight: 2158036
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 742 matches constituting 189 LCBs covering
at least 80b.p.
Previous weight: 464562 new weight: 464800
Performing LCB extension
Previous weight: 464800 new weight: 1734002
Previous weight: 1734002 new weight: 2029738
Previous weight: 2029738 new weight: 2108238
Previous weight: 2108238 new weight: 2133976
Previous weight: 2133976 new weight: 2142596
Previous weight: 2142596 new weight: 2145454
Previous weight: 2145454 new weight: 2146904
Previous weight: 2146904 new weight: 2147388
Previous weight: 2147388 new weight: 2147662
Previous weight: 2147662 new weight: 2147710
Previous weight: 2147710 new weight: 2147710
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 758 matches constituting 189 LCBs covering
at least 80b.p.
Previous weight: 464800 new weight: 465222
Performing LCB extension
Previous weight: 465222 new weight: 1733414
Previous weight: 1733414 new weight: 2029094
Previous weight: 2029094 new weight: 2108352
Previous weight: 2108352 new weight: 2134816
Previous weight: 2134816 new weight: 2143782
Previous weight: 2143782 new weight: 2146762
Previous weight: 2146762 new weight: 2148062
Previous weight: 2148062 new weight: 2148344
Previous weight: 2148344 new weight: 2148466
Previous weight: 2148466 new weight: 2148534
Previous weight: 2148534 new weight: 2148590
Previous weight: 2148590 new weight: 2148590
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 778 matches constituting 192 LCBs covering
at least 80b.p.
Previous weight: 465222 new weight: 465900
Performing LCB extension
Previous weight: 465900 new weight: 1731386
Previous weight: 1731386 new weight: 2026038
Previous weight: 2026038 new weight: 2104776
Previous weight: 2104776 new weight: 2131314
Previous weight: 2131314 new weight: 2139788
Previous weight: 2139788 new weight: 2142356
Previous weight: 2142356 new weight: 2143562
Previous weight: 2143562 new weight: 2144034
Previous weight: 2144034 new weight: 2144262
Previous weight: 2144262 new weight: 2144362
Previous weight: 2144362 new weight: 2144398
Previous weight: 2144398 new weight: 2144438
Previous weight: 2144438 new weight: 2144438
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 785 matches constituting 195 LCBs covering
at least 80b.p.
Previous weight: 465900 new weight: 466216
Performing LCB extension
Previous weight: 466216 new weight: 1730828
Previous weight: 1730828 new weight: 2024668
Previous weight: 2024668 new weight: 2103298
Previous weight: 2103298 new weight: 2129722
Previous weight: 2129722 new weight: 2138380
Previous weight: 2138380 new weight: 2141060
Previous weight: 2141060 new weight: 2142262
Previous weight: 2142262 new weight: 2142790
Previous weight: 2142790 new weight: 2142970
Previous weight: 2142970 new weight: 2143028
Previous weight: 2143028 new weight: 2143046
Previous weight: 2143046 new weight: 2143092
Previous weight: 2143092 new weight: 2143092
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 793 matches constituting 197 LCBs covering
at least 80b.p.
Previous weight: 466216 new weight: 466522
Performing LCB extension
Previous weight: 466522 new weight: 1728078
Previous weight: 1728078 new weight: 2021528
Previous weight: 2021528 new weight: 2100024
Previous weight: 2100024 new weight: 2125880
Previous weight: 2125880 new weight: 2134284
Previous weight: 2134284 new weight: 2136820
Previous weight: 2136820 new weight: 2137612
Previous weight: 2137612 new weight: 2138026
Previous weight: 2138026 new weight: 2138228
Previous weight: 2138228 new weight: 2138358
Previous weight: 2138358 new weight: 2138382
Previous weight: 2138382 new weight: 2138382
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 809 matches constituting 200 LCBs covering
at least 80b.p.
Previous weight: 466522 new weight: 467058
Performing LCB extension
Previous weight: 467058 new weight: 1725932
Previous weight: 1725932 new weight: 2018478
Previous weight: 2018478 new weight: 2097336
Previous weight: 2097336 new weight: 2123460
Previous weight: 2123460 new weight: 2132184
Previous weight: 2132184 new weight: 2135166
Previous weight: 2135166 new weight: 2136120
Previous weight: 2136120 new weight: 2136338
Previous weight: 2136338 new weight: 2136384
Previous weight: 2136384 new weight: 2136430
Previous weight: 2136430 new weight: 2136454
Previous weight: 2136454 new weight: 2136454
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 815 matches constituting 201 LCBs covering
at least 80b.p.
Previous weight: 467058 new weight: 467268
Performing LCB extension
Previous weight: 467268 new weight: 1722128
Previous weight: 1722128 new weight: 2014714
Previous weight: 2014714 new weight: 2092982
Previous weight: 2092982 new weight: 2119198
Previous weight: 2119198 new weight: 2127386
Previous weight: 2127386 new weight: 2130290
Previous weight: 2130290 new weight: 2131362
Previous weight: 2131362 new weight: 2131662
Previous weight: 2131662 new weight: 2131812
Previous weight: 2131812 new weight: 2131876
Previous weight: 2131876 new weight: 2131876
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 821 matches constituting 201 LCBs covering
at least 80b.p.
Previous weight: 467268 new weight: 467416
Performing LCB extension
Previous weight: 467416 new weight: 1725554
Previous weight: 1725554 new weight: 2018498
Previous weight: 2018498 new weight: 2098096
Previous weight: 2098096 new weight: 2124158
Previous weight: 2124158 new weight: 2132952
Previous weight: 2132952 new weight: 2135990
Previous weight: 2135990 new weight: 2136998
Previous weight: 2136998 new weight: 2137392
Previous weight: 2137392 new weight: 2137612
Previous weight: 2137612 new weight: 2137728
Previous weight: 2137728 new weight: 2137818
Previous weight: 2137818 new weight: 2137818
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 828 matches constituting 204 LCBs covering
at least 80b.p.
Previous weight: 467416 new weight: 467716
Performing LCB extension
Previous weight: 467716 new weight: 1717372
Previous weight: 1717372 new weight: 2008766
Previous weight: 2008766 new weight: 2086440
Previous weight: 2086440 new weight: 2111936
Previous weight: 2111936 new weight: 2120304
Previous weight: 2120304 new weight: 2122908
Previous weight: 2122908 new weight: 2123940
Previous weight: 2123940 new weight: 2124230
Previous weight: 2124230 new weight: 2124352
Previous weight: 2124352 new weight: 2124376
Previous weight: 2124376 new weight: 2124376
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 831 matches constituting 204 LCBs covering
at least 80b.p.
Previous weight: 467716 new weight: 467786
Performing LCB extension
Previous weight: 467786 new weight: 1721058
Previous weight: 1721058 new weight: 2012514
Previous weight: 2012514 new weight: 2090934
Previous weight: 2090934 new weight: 2116324
Previous weight: 2116324 new weight: 2124460
Previous weight: 2124460 new weight: 2127256
Previous weight: 2127256 new weight: 2128336
Previous weight: 2128336 new weight: 2128678
Previous weight: 2128678 new weight: 2128922
Previous weight: 2128922 new weight: 2128990
Previous weight: 2128990 new weight: 2129046
Previous weight: 2129046 new weight: 2129114
Previous weight: 2129114 new weight: 2129114
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 832 matches constituting 204 LCBs covering
at least 80b.p.
Previous weight: 467786 new weight: 467832
Performing LCB extension
Previous weight: 467832 new weight: 1719634
Previous weight: 1719634 new weight: 2010984
Previous weight: 2010984 new weight: 2089732
Previous weight: 2089732 new weight: 2115060
Previous weight: 2115060 new weight: 2123336
Previous weight: 2123336 new weight: 2126654
Previous weight: 2126654 new weight: 2127996
Previous weight: 2127996 new weight: 2128408
Previous weight: 2128408 new weight: 2128602
Previous weight: 2128602 new weight: 2128644
Previous weight: 2128644 new weight: 2128668
Previous weight: 2128668 new weight: 2128668
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 837 matches constituting 205 LCBs covering
at least 80b.p.
Previous weight: 467832 new weight: 468002
Performing LCB extension
Previous weight: 468002 new weight: 1719318
Previous weight: 1719318 new weight: 2010418
Previous weight: 2010418 new weight: 2089302
Previous weight: 2089302 new weight: 2114672
Previous weight: 2114672 new weight: 2123104
Previous weight: 2123104 new weight: 2126388
Previous weight: 2126388 new weight: 2127582
Previous weight: 2127582 new weight: 2127980
Previous weight: 2127980 new weight: 2128146
Previous weight: 2128146 new weight: 2128200
Previous weight: 2128200 new weight: 2128200
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 839 matches constituting 206 LCBs covering
at least 80b.p.
Previous weight: 468002 new weight: 468094
Performing LCB extension
Previous weight: 468094 new weight: 1719074
Previous weight: 1719074 new weight: 2010160
Previous weight: 2010160 new weight: 2089516
Previous weight: 2089516 new weight: 2114968
Previous weight: 2114968 new weight: 2123636
Previous weight: 2123636 new weight: 2126826
Previous weight: 2126826 new weight: 2128040
Previous weight: 2128040 new weight: 2128324
Previous weight: 2128324 new weight: 2128376
Previous weight: 2128376 new weight: 2128376
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 843 matches constituting 206 LCBs covering
at least 80b.p.
Previous weight: 468094 new weight: 468184
Performing LCB extension
Previous weight: 468184 new weight: 1697266
Previous weight: 1697266 new weight: 1984282
Previous weight: 1984282 new weight: 2065094
Previous weight: 2065094 new weight: 2090308
Previous weight: 2090308 new weight: 2099018
Previous weight: 2099018 new weight: 2101944
Previous weight: 2101944 new weight: 2103014
Previous weight: 2103014 new weight: 2103520
Previous weight: 2103520 new weight: 2103724
Previous weight: 2103724 new weight: 2103830
Previous weight: 2103830 new weight: 2103852
Previous weight: 2103852 new weight: 2103894
Previous weight: 2103894 new weight: 2103894
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 862 matches constituting 208 LCBs covering
at least 80b.p.
Previous weight: 468184 new weight: 468814
Performing LCB extension
Previous weight: 468814 new weight: 1694932
Previous weight: 1694932 new weight: 1980562
Previous weight: 1980562 new weight: 2061212
Previous weight: 2061212 new weight: 2086548
Previous weight: 2086548 new weight: 2095936
Previous weight: 2095936 new weight: 2099166
Previous weight: 2099166 new weight: 2100220
Previous weight: 2100220 new weight: 2100548
Previous weight: 2100548 new weight: 2100686
Previous weight: 2100686 new weight: 2100760
Previous weight: 2100760 new weight: 2100778
Previous weight: 2100778 new weight: 2100778
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 894 matches constituting 208 LCBs covering
at least 80b.p.
Previous weight: 468814 new weight: 469722
Performing LCB extension
Previous weight: 469722 new weight: 1689192
Previous weight: 1689192 new weight: 1972300
Previous weight: 1972300 new weight: 2052280
Previous weight: 2052280 new weight: 2077862
Previous weight: 2077862 new weight: 2086568
Previous weight: 2086568 new weight: 2090118
Previous weight: 2090118 new weight: 2091322
Previous weight: 2091322 new weight: 2091708
Previous weight: 2091708 new weight: 2091968
Previous weight: 2091968 new weight: 2092072
Previous weight: 2092072 new weight: 2092072
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 918 matches constituting 210 LCBs covering
at least 80b.p.
Previous weight: 469722 new weight: 470408
Performing LCB extension
Previous weight: 470408 new weight: 1689386
Previous weight: 1689386 new weight: 1972304
Previous weight: 1972304 new weight: 2052458
Previous weight: 2052458 new weight: 2078256
Previous weight: 2078256 new weight: 2087128
Previous weight: 2087128 new weight: 2090702
Previous weight: 2090702 new weight: 2091950
Previous weight: 2091950 new weight: 2092298
Previous weight: 2092298 new weight: 2092532
Previous weight: 2092532 new weight: 2092586
Previous weight: 2092586 new weight: 2092586
Number: 50 match 15 1133079 -904204
Number: 100 match 13 1147058 -873893
Performing greedy breakpoint elimination (this may take some time)
Greedy breakpoint elimination leaves 917 matches constituting 209 LCBs covering
at least 80b.p.
Previous weight: 470408 new weight: 470338
Performing LCB extension
Previous weight: 470338 new weight: 1689370
Previous weight: 1689370 new weight: 1972318
Previous weight: 1972318 new weight: 2052484
Previous weight: 2052484 new weight: 2078356
Previous weight: 2078356 new weight: 2087036
Previous weight: 2087036 new weight: 2090740
Previous weight: 2090740 new weight: 2091884
Previous weight: 2091884 new weight: 2092194
Creating dmSML for seqI 0
Unhandled exception: boost::filesystem::path: invalid name
"C:\DOCUME~1\cousinss\LOCALS~1\Temp\seqED.tmp.raw" in path:
"C:\DOCUME~1\cousinss\LOCALS~1\Temp\seqED.tmp.raw"
Exited with error code: -11
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