Hi, I have a problem with Mauve Version 2.0.0. I think genomes label are not correctly assigned in the file.islands. For example in an alignment of 3 genomes i have the following file.islands:
17559904 18209 18323 0 -248238 -248239 17559904 20251 20252 0 -250159 -250332 17559904 4486 5190 0 -228649 -228650 17559904 9372 9920 0 -232774 -232775 17559904 20164 20286 0 -243029 -243030 17559904 27269 28502 0 -250013 -250014 17559904 -234503 -235207 0 -228649 -228650 17559904 -239390 -239938 0 -232774 -232775 17559904 -248238 -248239 0 -241075 -241189 17559904 -250074 -250366 0 -243029 -243030 17559904 -257348 -258581 0 -250013 -250014 but if i use mauve version 1.3.0 i obtain this: 0 18209 18323 1 -248238 -248239 0 20251 20252 1 -250159 -250332 0 4486 5190 2 -228649 -228650 0 9372 9920 2 -232774 -232775 0 20164 20286 2 -243029 -243030 0 27269 28502 2 -250013 -250014 1 -234503 -235207 2 -228649 -228650 1 -239390 -239938 2 -232774 -232775 1 -248238 -248239 2 -241075 -241189 1 -250074 -250366 2 -243029 -243030 1 -257348 -258581 2 -250013 -250014 How can i resolve this problem? Thank you Sonia ------------------------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. Download your FREE copy of Splunk now >> http://get.splunk.com/ _______________________________________________ Mauve-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mauve-users
