Yep, that's a bug indeed. I have created an entry describing the bug in our bug tracker: http://sourceforge.net/tracker/index.php?func=detail&aid=1783932&group_id=181544&atid=897627
I will update the status of the bug in the tracker when it gets fixed, which should be soon since this sounds like a pretty nasty one, and because it's a regression against 1.3.0. In the meantime, the best advice I can give is to use version 1.3.0 to construct alignments when .backbone files are required. The progressiveMauve algorithm in version 2.0.0 can still be used to generate backbone data. Regards, -Aaron [EMAIL PROTECTED] wrote: > Hi, > I have a problem with Mauve Version 2.0.0. > I think genomes label are not correctly assigned in the file.islands. > For example in an alignment of 3 genomes i have the following file.islands: > > 17559904 18209 18323 0 -248238 -248239 > 17559904 20251 20252 0 -250159 -250332 > 17559904 4486 5190 0 -228649 -228650 > 17559904 9372 9920 0 -232774 -232775 > 17559904 20164 20286 0 -243029 -243030 > 17559904 27269 28502 0 -250013 -250014 > 17559904 -234503 -235207 0 -228649 -228650 > 17559904 -239390 -239938 0 -232774 -232775 > 17559904 -248238 -248239 0 -241075 -241189 > 17559904 -250074 -250366 0 -243029 -243030 > 17559904 -257348 -258581 0 -250013 -250014 > > > > but if i use mauve version 1.3.0 i obtain this: > 0 18209 18323 1 -248238 -248239 > 0 20251 20252 1 -250159 -250332 > 0 4486 5190 2 -228649 -228650 > 0 9372 9920 2 -232774 -232775 > 0 20164 20286 2 -243029 -243030 > 0 27269 28502 2 -250013 -250014 > 1 -234503 -235207 2 -228649 -228650 > 1 -239390 -239938 2 -232774 -232775 > 1 -248238 -248239 2 -241075 -241189 > 1 -250074 -250366 2 -243029 -243030 > 1 -257348 -258581 2 -250013 -250014 > > How can i resolve this problem? > Thank you > > Sonia > > ------------------------------------------------------------------------- > This SF.net email is sponsored by: Splunk Inc. > Still grepping through log files to find problems? Stop. > Now Search log events and configuration files using AJAX and a browser. > Download your FREE copy of Splunk now >> http://get.splunk.com/ > _______________________________________________ > Mauve-users mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/mauve-users > ------------------------------------------------------------------------- This SF.net email is sponsored by: Splunk Inc. Still grepping through log files to find problems? Stop. Now Search log events and configuration files using AJAX and a browser. Download your FREE copy of Splunk now >> http://get.splunk.com/ _______________________________________________ Mauve-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mauve-users
