Hi Everyone We use Mauve 1.2.3 and Mauve 2.2 with many bacterial genomes and sometime we have some errors with Mauve 2.2 on this genomes alignments: (we use Genome Review)
Clostridium_botulinum * CP000727_GR - CP001056_GR * CP001056_GR - AM412317_GR * CP001078_GR - AM412317_GR * CP001078_GR - CP000727_GR - CP001056_GR - CP000726_GR - AM412317_GR - CP000939_GR - CP000962_GR - CP000728_GR Prochlorococcus_marinus * CP000111_GR - CP000554_GR * CP000551_GR - CP000554_GR Synechococcus_elongatus * BA000039_GR - CP000100_GR Error comes from libMems/Interval.h at line 373 Error log is like this (error log from Clostridium_botulinum: CP000727_GR - CP001056_GR) triplebogus interval data (*iter)->LeftEnd(1): 3631162 pos: 3642022 triplebogus interval data (*iter)->LeftEnd(1): 3625596 pos: 3631184 triplebogus interval data (*iter)->LeftEnd(1): 3625573 pos: 3631161 triplebogus interval data (*iter)->LeftEnd(1): 3601384 pos: 3625595 triplebogus interval data (*iter)->LeftEnd(1): 3582896 pos: 3601406 triplebogus interval data (*iter)->LeftEnd(1): 3576572 pos: 3582918 triplebogus interval data (*iter)->LeftEnd(1): 3576549 pos: 3582895 triplebogus interval data (*iter)->LeftEnd(1): 3513643 pos: 3576571 triplebogus interval data (*iter)->LeftEnd(1): 3513510 pos: 3513665 triplebogus interval data (*iter)->LeftEnd(1): 3513487 pos: 3513642 triplebogus interval data (*iter)->LeftEnd(1): 3496158 pos: 3513509 triplebogus interval data (*iter)->LeftEnd(1): 3496066 pos: 3496180 triplebogus interval data (*iter)->LeftEnd(1): 3486909 pos: 3496085 triplebogus interval data (*iter)->LeftEnd(1): 3486886 pos: 3496065 triplebogus interval data (*iter)->LeftEnd(1): 3393995 pos: 3486908 Ludovic Legrand INRA - Mathematique, Informatique et Genome Domaine de Vilvert F-78350 Jouy-en-Josas ------------------------------------------------------------------------- This SF.Net email is sponsored by the Moblin Your Move Developer's challenge Build the coolest Linux based applications with Moblin SDK & win great prizes Grand prize is a trip for two to an Open Source event anywhere in the world http://moblin-contest.org/redirect.php?banner_id=100&url=/ _______________________________________________ Mauve-users mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/mauve-users
