Dear all,

I'm running cell lysate on superose 6 followed by SDS-PAGE WB. While my
protein of interest is detected as a single band in the unfractionated
lysate (i.e. total protein), it reproducibly migrates as two discrete bands
in superose 6 fractions.

Now, this is not a matter of relative concentration, because the two bands
occur in ALL superose 6 fractions and cannot be detected in unfractionated
lysate, even at up to 200ug total protein!

My lysis buffer contains protease and phosphatase inhibitors, so this
shouldn't be the problem.

Any ideas as to why gel filtration chould affect the migration pattern of an
individual protein?

Thanks,
Ranen Aviner
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