These are NIFTI files, after loading the orientation is OK, after Reinit
(or after creating the Segmentation image), the axial view is flipped
upside down. I can provide a file once I get home.
I was refering to my previous conversation with Andreas:
*Hi Amir,please keep the conversation on the list, so that other MITK users
can benefit from it as well.Thank you very much for your feedback! We are
currently reworking the region growing tool and also working on a bug that
leads to sudden crashed during manual segmentation.So the bugs you describe
might be fixed soon.As for the flipped image: I think this is related to
the following issue: http://bugs.mitk.org/show_bug.cgi?id=8350
<http://bugs.mitk.org/show_bug.cgi?id=8350>*
*Please note that the image itself is not flipped but the camera from which
we look at the image.However I understand that it is annoying if the image
is suddenly upside down. It would be very helpful if you could provide the
dataset so that we can reproduce the behaviour.If you find further issues
feel free to open a new bug in our bug tracking
system: http://bugs.mitk.org <http://bugs.mitk.org/>*
*Best,Andreas*
2016-03-17 14:01 GMT+01:00 Kolb, Christoph <c.k...@dkfz-heidelberg.de>:
> Hello Amir,
>
> can you please tell which bug you are referring to? Mitk initializes the
> standard view directions
> (axial, sagittal and coronal) under the assumption that the directions are
> correctly defined in the
> image data. in NRRD files, die world coordinate system is defined by the
> "space directions" matrix.
>
> I think we had some problems with the "AnatomicalOrientation" specifier in
> MHA files. What kind of
> images are you loading?
>
> To answer your actual question: You can rotate the camera directly by
> modifying the vtkCamera:
> mitk::BaseRenderer::GetVtkRenderer()->GetActiveCamera()->SetViewUp
> But the camera rotation will always reset to the original after you
> interacted with the render
> window.
>
> Regards
> Christoph
>
> On Wed, 2016-03-16 at 19:16 +0100, Amir Zolal wrote:
> > Hello Mitkers,
> >
> > is there a way to manually turn the camera to the right orientation
> after reinit? The axial image
> > still gets turned upside down. Is manual correction possible until the
> bug is fixed?
> >
> > Amir
>
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