See <https://builds.apache.org/job/ctakes-trunk-compiletest/1121/display/redirect?page=changes>
Changes: [seanfinan] FileTreeReader : Allow specification of a single file ------------------------------------------ [...truncated 806.39 KB...] ** Error: problem of opening/reading config file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties'.> Use -x option to specify the config file path. ** Configuration Error: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties> (No such file or directory) ** Error: problem of opening/reading config file: '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-lvg-res/target/classes/org/apache/ctakes/lvg/data/config/lvg.properties'.> Use -x option to specify the config file path. 09 Nov 2017 16:32:58 INFO LvgCmdApiResourceImpl - cd <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-temporal> 09 Nov 2017 16:32:58 INFO ContextDependentTokenizerAnnotator - Finite state machines loaded. 09 Nov 2017 16:32:58 INFO POSTagger - POS tagger model file: org/apache/ctakes/postagger/models/mayo-pos.zip Loading configuration. Loading feature templates. Loading lexica. Loading model: ........................................................................................ 09 Nov 2017 16:33:10 INFO ClearNLPDependencyParserAE - Initializing ClearNLP dependency parser, using lemmatizer: true 09 Nov 2017 16:33:10 INFO BackwardsTimeAnnotator - Initializing ... . 09 Nov 2017 16:33:10 INFO BackwardsTimeAnnotator - Finished. 09 Nov 2017 16:33:13 INFO EventEventRelationAnnotator - Initializing ... . 09 Nov 2017 16:33:13 INFO EventEventRelationAnnotator - Finished. 09 Nov 2017 16:33:13 INFO SentenceDetector - Starting processing. 09 Nov 2017 16:33:13 INFO TokenizerAnnotatorPTB - process(JCas) in org.apache.ctakes.core.ae.TokenizerAnnotatorPTB 09 Nov 2017 16:33:13 INFO LvgAnnotator - process(JCas) 09 Nov 2017 16:33:13 INFO ContextDependentTokenizerAnnotator - process(JCas) 09 Nov 2017 16:33:13 INFO POSTagger - process(JCas) 09 Nov 2017 16:33:13 INFO ClearNLPDependencyParserAE - Dependency parser starting with thread:main 09 Nov 2017 16:33:13 INFO ClearNLPDependencyParserAE - Dependency parser ending with thread:main Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 17.332 sec Results : Tests run: 5, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results [JENKINS] Archiving disabled [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Apache cTAKES CoReference Resolver 4.0.1-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-coreference --- [INFO] [INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-coreference --- [INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-coreference --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 12 resources [INFO] Copying 3 resources [INFO] [INFO] --- jcasgen-maven-plugin:2.9.0:generate (default) @ ctakes-coreference --- [INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/PredicateArgRelation.xml'> [INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/CollectionRelation.xml'> [INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/VecInst.xml'> [INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Pair.xml'> [INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/BooleanLabeledFS.xml'> [INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Properties.xml'> [INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/TypeSystem.xml'> [INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/CoreferenceRelation.xml'> [INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/RelationArgument.xml'> [INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/BinaryRelation.xml'> [INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/Relation.xml'> [INFO] JCasGen: Found descriptor '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/resources/org/apache/ctakes/coreference/types/DiscoveryTechnique.xml'> [INFO] JCasGen: Limiting generation to descriptors in '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference'> [INFO] JCasGen: Output going to '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/generated-sources/jcasgen'> [INFO] JCasGen: Reading the XML TAE descriptor, and creating types, for xml input file '<https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/jcasgen/typesystem.xml'.> [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.AnaphoricityVecInstance'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.AnaphoricityVecInstance_Type'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BinaryRelation'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BinaryRelation_Type'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BooleanLabeledFS'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.BooleanLabeledFS_Type'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CollectionRelation'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CollectionRelation_Type'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CoreferenceRelation'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.CoreferenceRelation_Type'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DemMarkable'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DemMarkable_Type'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DiscoveryTechnique'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.DiscoveryTechnique_Type'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Markable'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Markable_Type'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePair'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePair_Type'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePairSet'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.MarkablePairSet_Type'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NEMarkable'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NEMarkable_Type'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NonCoreferenceRelation'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.NonCoreferenceRelation_Type'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Pair'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Pair_Type'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PredicateArgRelation'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PredicateArgRelation_Type'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PronounMarkable'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.PronounMarkable_Type'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Properties'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Properties_Type'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Relation'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.Relation_Type'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.RelationArgument'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.RelationArgument_Type'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.UnrelationArgument'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.UnrelationArgument_Type'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.VecInstance'. [INFO] JCasGen: Creating: 'org.apache.ctakes.coreference.type.VecInstance_Type'. [INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-coreference --- [INFO] Compiling 134 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/target/classes> [INFO] ------------------------------------------------------------- [ERROR] COMPILATION ERROR : [INFO] ------------------------------------------------------------- [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53] error: cannot find symbol [ERROR] symbol: method getPreviousPatientName() location: variable notes of type PatientNoteStore <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53] error: cannot find symbol [INFO] 2 errors [INFO] ------------------------------------------------------------- [JENKINS] Archiving disabled [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Apache cTAKES ..................................... SUCCESS [4.492s] [INFO] ctakes-gui-res .................................... SUCCESS [21.969s] [INFO] Apache cTAKES Resources core ...................... SUCCESS [2.227s] [INFO] Apache cTAKES common type system .................. SUCCESS [22.039s] [INFO] Apache cTAKES utils ............................... SUCCESS [3.231s] [INFO] Apache cTAKES core ................................ SUCCESS [21.007s] [INFO] ctakes-gui ........................................ SUCCESS [3.890s] [INFO] Apache cTAKES Resources pos-tagger ................ SUCCESS [2.198s] [INFO] Apache cTAKES part-of-speech tagger ............... SUCCESS [7.927s] [INFO] Apache cTAKES Resources ctakes-chunker-res ........ SUCCESS [2.238s] [INFO] Apache cTAKES chunker ............................. SUCCESS [3.432s] [INFO] Apache cTAKES document preprocessor ............... SUCCESS [3.537s] [INFO] Apache cTAKES Resources dictionary-lookup ......... SUCCESS [10.248s] [INFO] Apache cTAKES dictionary lookup ................... SUCCESS [4.194s] [INFO] Apache cTAKES context dependent tokenizer ......... SUCCESS [7.684s] [INFO] Apache cTAKES Resources lvg ....................... SUCCESS [26.527s] [INFO] Apache cTAKES LVG lexical tools ................... SUCCESS [4.865s] [INFO] Apache cTAKES Resources ne-contexts ............... SUCCESS [3.580s] [INFO] Apache cTAKES named entity contexts ............... SUCCESS [3.880s] [INFO] Apache cTAKES Resources constituency-parser ....... SUCCESS [2.362s] [INFO] Apache cTAKES Constituency Parser ................. SUCCESS [3.130s] [INFO] Apache cTAKES Resources coreference ............... SUCCESS [2.259s] [INFO] Apache cTAKES Resources temporal .................. SUCCESS [2.374s] [INFO] Apache cTAKES Resources relation-extractor ........ SUCCESS [2.234s] [INFO] Apache cTAKES Resources dictionary-lookup-fast-res SUCCESS [3.149s] [INFO] Apache cTAKES dictionary lookup fast .............. SUCCESS [2.940s] [INFO] Apache cTAKES Resources assertion ................. SUCCESS [2.326s] [INFO] Apache cTAKES Resources dependency-parser ......... SUCCESS [2.649s] [INFO] Apache cTAKES Dependency Parser ................... SUCCESS [35.241s] [INFO] Apache cTAKES Assertion ........................... SUCCESS [4.042s] [INFO] ctakes-clinical-pipeline-res ...................... SUCCESS [2.222s] [INFO] Apache cTAKES ctakes-clinical-pipeline ............ SUCCESS [5.213s] [INFO] Apache cTAKES Relation Extractor .................. SUCCESS [11.722s] [INFO] Apache cTAKES Temporal Information Extraction ..... SUCCESS [1:46.445s] [INFO] Apache cTAKES CoReference Resolver ................ FAILURE [4.911s] [INFO] Apache cTAKES Resources drug-ner .................. SKIPPED [INFO] Apache cTAKES Drug NER ............................ SKIPPED [INFO] Apache cTAKES Resources side-effect ............... SKIPPED [INFO] Apache cTAKES Side Effects ........................ SKIPPED [INFO] Apache cTAKES Resources smoking-status ............ SKIPPED [INFO] Apache cTAKES Smoking Status ...................... SKIPPED [INFO] Apache cTAKES Resources assertion-zoner ........... SKIPPED [INFO] Apache cTAKES Assertion's zoner ................... SKIPPED [INFO] ctakes-examples-res ............................... SKIPPED [INFO] ctakes-examples ................................... SKIPPED [INFO] Apache cTAKES Resources ctakes-ytex-res ........... SKIPPED [INFO] Apache cTAKES YTEX ................................ SKIPPED [INFO] Apache cTAKES YTEX UIMA ........................... SKIPPED [INFO] Apache cTAKES YTEX Web ............................ SKIPPED [INFO] Apache cTAKES Distribution ........................ SKIPPED [INFO] Apache cTAKES Regression-test ..................... SKIPPED [INFO] Apache cTAKES template filler ..................... SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 6:35.599s [INFO] Finished at: Thu Nov 09 16:33:21 UTC 2017 [INFO] Final Memory: 71M/467M [INFO] ------------------------------------------------------------------------ [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled Waiting for Jenkins to finish collecting data [ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-coreference: Compilation failure: Compilation failure: [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1030,53] error: cannot find symbol [ERROR] symbol: method getPreviousPatientName() [ERROR] location: variable notes of type PatientNoteStore [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-coreference/src/main/java/org/apache/ctakes/coreference/eval/EvaluationOfEventCoreference.java>:[1076,53] error: cannot find symbol [ERROR] -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException [ERROR] [ERROR] After correcting the problems, you can resume the build with the command [ERROR] mvn <goals> -rf :ctakes-coreference Sending e-mails to: [email protected] [email protected] channel stopped
