See <https://builds.apache.org/job/ctakes-trunk-compiletest/1127/display/redirect?page=changes>
Changes: [seanfinan] Minor refactor (shorter names) [seanfinan] Rewrite of Patient view cache ------------------------------------------ [...truncated 411.74 KB...] [JENKINS] Archiving disabled [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Apache cTAKES utils 4.0.1-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-utils --- [INFO] [INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-utils --- [INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-utils --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/src/main/resources> [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-utils --- [INFO] Compiling 26 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/target/classes> [WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/src/main/java/org/apache/ctakes/utils/wiki/WikiIndex.java>:[92,28] [deprecation] open(Directory) in IndexReader has been deprecated [WARNING] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/src/main/java/org/apache/ctakes/utils/wiki/WikiIndex.java>:[293,60] [deprecation] LUCENE_30 in Version has been deprecated [INFO] [INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-utils --- [INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-utils --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/src/main/resources> [INFO] Copying 3 resources [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-utils --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-resources-plugin:2.5:testResources (default-testResources) @ ctakes-utils --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/src/test/resources> [INFO] Copying 3 resources [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:2.4:testCompile (default-testCompile) @ ctakes-utils --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.12.1:test (default-test) @ ctakes-utils --- [INFO] Surefire report directory: <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-utils/target/surefire-reports> ------------------------------------------------------- T E S T S ------------------------------------------------------- Results : Tests run: 0, Failures: 0, Errors: 0, Skipped: 0 [JENKINS] Recording test results [JENKINS] Archiving disabled [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Apache cTAKES core 4.0.1-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-clean-plugin:2.4.1:clean (default-clean) @ ctakes-core --- [INFO] [INFO] --- maven-remote-resources-plugin:1.4:process (default) @ ctakes-core --- [INFO] [INFO] --- maven-resources-plugin:2.5:resources (default-resources) @ ctakes-core --- [debug] execute contextualize [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/resources> [INFO] Copying 3 resources [INFO] [INFO] --- maven-compiler-plugin:2.4:compile (default-compile) @ ctakes-core --- [INFO] Compiling 229 source files to <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/target/classes> [INFO] ------------------------------------------------------------- [ERROR] COMPILATION ERROR : [INFO] ------------------------------------------------------------- [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FilesInDirectoryCollectionReader.java>:[113,26] [deprecation] locateFile(String) in FileLocator has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SentenceDetector.java>:[314,30] [deprecation] train(String,ObjectStream<SentenceSample>,boolean,Dictionary,TrainingParameters) in SentenceDetectorME has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/util/ListIterable.java>:[34,50] [unchecked] unchecked cast [ERROR] required: T found: TOP where T is a type-variable: T extends Object declared in class FSListIterator <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[126,39] error: cannot find symbol [ERROR] symbol: method setDocCount(String,int) location: class PatientNoteStore <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[130,78] error: cannot find symbol [ERROR] symbol: method setDocCount(String,Integer) location: class PatientNoteStore <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[66,77] error: cannot find symbol [ERROR] symbol: method getPatientIds() location: class PatientNoteStore <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[87,55] error: cannot find symbol [ERROR] symbol: method getPatientCas(String) location: class PatientNoteStore <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/JdbcCollectionReader.java>:[177,25] [unchecked] unchecked conversion [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/PatientNoteCollector.java>:[37,36] error: cannot find symbol [INFO] 9 errors [INFO] ------------------------------------------------------------- [JENKINS] Archiving disabled [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] Apache cTAKES ..................................... SUCCESS [5.987s] [INFO] ctakes-gui-res .................................... SUCCESS [3.772s] [INFO] Apache cTAKES Resources core ...................... SUCCESS [2.382s] [INFO] Apache cTAKES common type system .................. SUCCESS [7.814s] [INFO] Apache cTAKES utils ............................... SUCCESS [3.312s] [INFO] Apache cTAKES core ................................ FAILURE [3.341s] [INFO] ctakes-gui ........................................ SKIPPED [INFO] Apache cTAKES Resources pos-tagger ................ SKIPPED [INFO] Apache cTAKES part-of-speech tagger ............... SKIPPED [INFO] Apache cTAKES Resources ctakes-chunker-res ........ SKIPPED [INFO] Apache cTAKES chunker ............................. SKIPPED [INFO] Apache cTAKES document preprocessor ............... SKIPPED [INFO] Apache cTAKES Resources dictionary-lookup ......... SKIPPED [INFO] Apache cTAKES dictionary lookup ................... SKIPPED [INFO] Apache cTAKES context dependent tokenizer ......... SKIPPED [INFO] Apache cTAKES Resources lvg ....................... SKIPPED [INFO] Apache cTAKES LVG lexical tools ................... SKIPPED [INFO] Apache cTAKES Resources ne-contexts ............... SKIPPED [INFO] Apache cTAKES named entity contexts ............... SKIPPED [INFO] Apache cTAKES Resources constituency-parser ....... SKIPPED [INFO] Apache cTAKES Constituency Parser ................. SKIPPED [INFO] Apache cTAKES Resources coreference ............... SKIPPED [INFO] Apache cTAKES Resources temporal .................. SKIPPED [INFO] Apache cTAKES Resources relation-extractor ........ SKIPPED [INFO] Apache cTAKES Resources dictionary-lookup-fast-res SKIPPED [INFO] Apache cTAKES dictionary lookup fast .............. SKIPPED [INFO] Apache cTAKES Resources assertion ................. SKIPPED [INFO] Apache cTAKES Resources dependency-parser ......... SKIPPED [INFO] Apache cTAKES Dependency Parser ................... SKIPPED [INFO] Apache cTAKES Assertion ........................... SKIPPED [INFO] ctakes-clinical-pipeline-res ...................... SKIPPED [INFO] Apache cTAKES ctakes-clinical-pipeline ............ SKIPPED [INFO] Apache cTAKES Relation Extractor .................. SKIPPED [INFO] Apache cTAKES Temporal Information Extraction ..... SKIPPED [INFO] Apache cTAKES CoReference Resolver ................ SKIPPED [INFO] Apache cTAKES Resources drug-ner .................. SKIPPED [INFO] Apache cTAKES Drug NER ............................ SKIPPED [INFO] Apache cTAKES Resources side-effect ............... SKIPPED [INFO] Apache cTAKES Side Effects ........................ SKIPPED [INFO] Apache cTAKES Resources smoking-status ............ SKIPPED [INFO] Apache cTAKES Smoking Status ...................... SKIPPED [INFO] Apache cTAKES Resources assertion-zoner ........... SKIPPED [INFO] Apache cTAKES Assertion's zoner ................... SKIPPED [INFO] ctakes-examples-res ............................... SKIPPED [INFO] ctakes-examples ................................... SKIPPED [INFO] Apache cTAKES Resources ctakes-ytex-res ........... SKIPPED [INFO] Apache cTAKES YTEX ................................ SKIPPED [INFO] Apache cTAKES YTEX UIMA ........................... SKIPPED [INFO] Apache cTAKES YTEX Web ............................ SKIPPED [INFO] Apache cTAKES Distribution ........................ SKIPPED [INFO] Apache cTAKES Regression-test ..................... SKIPPED [INFO] Apache cTAKES template filler ..................... SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 38.299s [INFO] Finished at: Thu Nov 16 20:28:29 UTC 2017 [INFO] Final Memory: 37M/411M [INFO] ------------------------------------------------------------------------ [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled [JENKINS] Archiving disabled Waiting for Jenkins to finish collecting data [ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.4:compile (default-compile) on project ctakes-core: Compilation failure: Compilation failure: [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FilesInDirectoryCollectionReader.java>:[113,26] [deprecation] locateFile(String) in FileLocator has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/ae/SentenceDetector.java>:[314,30] [deprecation] train(String,ObjectStream<SentenceSample>,boolean,Dictionary,TrainingParameters) in SentenceDetectorME has been deprecated [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/util/ListIterable.java>:[34,50] [unchecked] unchecked cast [ERROR] required: T [ERROR] found: TOP [ERROR] where T is a type-variable: [ERROR] T extends Object declared in class FSListIterator [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[126,39] error: cannot find symbol [ERROR] symbol: method setDocCount(String,int) [ERROR] location: class PatientNoteStore [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/FileTreeReader.java>:[130,78] error: cannot find symbol [ERROR] symbol: method setDocCount(String,Integer) [ERROR] location: class PatientNoteStore [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[66,77] error: cannot find symbol [ERROR] symbol: method getPatientIds() [ERROR] location: class PatientNoteStore [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/AbstractPatientConsumer.java>:[87,55] error: cannot find symbol [ERROR] symbol: method getPatientCas(String) [ERROR] location: class PatientNoteStore [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/cr/JdbcCollectionReader.java>:[177,25] [unchecked] unchecked conversion [ERROR] <https://builds.apache.org/job/ctakes-trunk-compiletest/ws/ctakes-core/src/main/java/org/apache/ctakes/core/patient/PatientNoteCollector.java>:[37,36] error: cannot find symbol [ERROR] -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException [ERROR] [ERROR] After correcting the problems, you can resume the build with the command [ERROR] mvn <goals> -rf :ctakes-core Sending e-mails to: [email protected] [email protected] channel stopped
