Chris,
Thank you for responding to my post. I uninstalled and then reinstalled
CommandLineTools per your suggestion. I'm still getting the same error.
It appears that gcc is not seeing any of the CommandLineTools
directories. When I ran the command
find /Library/Developer/CommandLineTools/ -name _stdio.h
I got:
(base) user@Mac-Pro ~ % find /Library/Developer/CommandLineTools/ -name
_stdio.h
/Library/Developer/CommandLineTools//SDKs/MacOSX11.1.sdk/usr/include/_stdio.h
/Library/Developer/CommandLineTools//SDKs/MacOSX11.1.sdk/usr/include/xlocale/_stdio.h
/Library/Developer/CommandLineTools//SDKs/MacOSX11.1.sdk/usr/include/secure/_stdio.h
/Library/Developer/CommandLineTools//SDKs/MacOSX10.15.sdk/usr/include/_stdio.h
/Library/Developer/CommandLineTools//SDKs/MacOSX10.15.sdk/usr/include/xlocale/_stdio.h
/Library/Developer/CommandLineTools//SDKs/MacOSX10.15.sdk/usr/include/secure/_stdio.h
Any suggestions?
Sam Dupree.
On January/12/2021 05:11:50, Christopher Albert wrote:
Hi Sam,
looks like the XCode command line tools containing standard headers
are either not installed or updated. Try xcode-select --install or
manually download them from https://developer.apple.com/download/more/
<https://developer.apple.com/download/more/> and maybe
uninstall/reinstall them in case updates don't work. Check with
find /Library/Developer/CommandLineTools/ -name _stdio.h
which should
give /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include/_stdio.h
(besides possible older versions of MacOSX)
Best,
Chris
Am Sa., 9. Jan. 2021 um 03:02 Uhr schrieb Samuel Dupree
<sdup...@speakeasy.net <mailto:sdup...@speakeasy.net>>:
I'm attempting to wrap a Fortran-77 source member library using f2py.
I'm running he Anaconda distribution for Python 3.7.6 on a Mac Pro
(2019) under Mac OS X Big Sur (ver. 11.1). The version of
Xcode.app I'm
running is 12.3. The version of NumPy I'm running is 1.18.3.
The errors I'm getting are from header files the compiler can't
find as
captured in the attached log file. A sample of the kind of errors I'm
seeing are captured below.
compile options:
'-I/var/folders/2r/4bw6nw0x58z0_ybx632_h14m0000gq/T/tmp5uemdb2k/src.macosx-10.9-x86_64-3.7
-I/Users/user/opt/anaconda3/lib/python3.7/site-packages/numpy/core/include
-I/Users/user/opt/anaconda3/include/python3.7m -c'
gcc:
/var/folders/2r/4bw6nw0x58z0_ybx632_h14m0000gq/T/tmp5uemdb2k/src.macosx-10.9-x86_64-3.7/sofapymodule.c
gcc:
/var/folders/2r/4bw6nw0x58z0_ybx632_h14m0000gq/T/tmp5uemdb2k/src.macosx-10.9-x86_64-3.7/fortranobject.c
In file included from
/opt/local/lib/gcc10/gcc/x86_64-apple-darwin20/10.2.0/include-fixed/syslimits.h:7,
from
/opt/local/lib/gcc10/gcc/x86_64-apple-darwin20/10.2.0/include-fixed/limits.h:34,
from
/Users/user/opt/anaconda3/include/python3.7m/Python.h:11,
from
/var/folders/2r/4bw6nw0x58z0_ybx632_h14m0000gq/T/tmp5uemdb2k/src.macosx-10.9-x86_64-3.7/sofapymodule.c:14:
/opt/local/lib/gcc10/gcc/x86_64-apple-darwin20/10.2.0/include-fixed/limits.h:195:61:
error: no include path in which to search for limits.h
195 | #include_next <limits.h> /* recurse down to the real one */
| ^
In file included from
/Users/user/opt/anaconda3/include/python3.7m/Python.h:25,
from
/var/folders/2r/4bw6nw0x58z0_ybx632_h14m0000gq/T/tmp5uemdb2k/src.macosx-10.9-x86_64-3.7/sofapymodule.c:14:
/opt/local/lib/gcc10/gcc/x86_64-apple-darwin20/10.2.0/include-fixed/stdio.h:78:10:
fatal error: _stdio.h: No such file or directory
78 | #include <_stdio.h>
| ^~~~~~~~~~
compilation terminated.
Any suggestions?
Sam Dupree.
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