Sam, the last suggestion from my side would be to upgrade or reinstall macports from https://www.macports.org/install.php and/or set your gcc compiler version to the latest one via port select. Then I'm out of clues too.
Best, Chris Am Sa., 23. Jan. 2021 um 21:22 Uhr schrieb Samuel Dupree < sdup...@speakeasy.net>: > Chris, > > Thank you for responding to my post. I uninstalled and then reinstalled > CommandLineTools per your suggestion. I'm still getting the same error. It > appears that gcc is not seeing any of the CommandLineTools directories. > When I ran the command > find /Library/Developer/CommandLineTools/ -name _stdio.h > > I got: > > (base) user@Mac-Pro ~ % find /Library/Developer/CommandLineTools/ -name > _stdio.h > > /Library/Developer/CommandLineTools//SDKs/MacOSX11.1.sdk/usr/include/_stdio.h > > /Library/Developer/CommandLineTools//SDKs/MacOSX11.1.sdk/usr/include/xlocale/_stdio.h > > /Library/Developer/CommandLineTools//SDKs/MacOSX11.1.sdk/usr/include/secure/_stdio.h > > /Library/Developer/CommandLineTools//SDKs/MacOSX10.15.sdk/usr/include/_stdio.h > > /Library/Developer/CommandLineTools//SDKs/MacOSX10.15.sdk/usr/include/xlocale/_stdio.h > > /Library/Developer/CommandLineTools//SDKs/MacOSX10.15.sdk/usr/include/secure/_stdio.h > > Any suggestions? > > Sam Dupree. > > > > > On January/12/2021 05:11:50, Christopher Albert wrote: > > Hi Sam, > > looks like the XCode command line tools containing standard headers are > either not installed or updated. Try xcode-select --install or manually > download them from https://developer.apple.com/download/more/ and maybe > uninstall/reinstall them in case updates don't work. Check with > > find /Library/Developer/CommandLineTools/ -name _stdio.h > > which should > give > /Library/Developer/CommandLineTools/SDKs/MacOSX10.15.sdk/usr/include/_stdio.h > (besides possible older versions of MacOSX) > > Best, > > Chris > > > > > Am Sa., 9. Jan. 2021 um 03:02 Uhr schrieb Samuel Dupree < > sdup...@speakeasy.net>: > >> I'm attempting to wrap a Fortran-77 source member library using f2py. >> I'm running he Anaconda distribution for Python 3.7.6 on a Mac Pro >> (2019) under Mac OS X Big Sur (ver. 11.1). The version of Xcode.app I'm >> running is 12.3. The version of NumPy I'm running is 1.18.3. >> >> The errors I'm getting are from header files the compiler can't find as >> captured in the attached log file. A sample of the kind of errors I'm >> seeing are captured below. >> >> compile options: >> '-I/var/folders/2r/4bw6nw0x58z0_ybx632_h14m0000gq/T/tmp5uemdb2k/src.macosx-10.9-x86_64-3.7 >> >> -I/Users/user/opt/anaconda3/lib/python3.7/site-packages/numpy/core/include >> >> -I/Users/user/opt/anaconda3/include/python3.7m -c' >> gcc: >> >> /var/folders/2r/4bw6nw0x58z0_ybx632_h14m0000gq/T/tmp5uemdb2k/src.macosx-10.9-x86_64-3.7/sofapymodule.c >> gcc: >> >> /var/folders/2r/4bw6nw0x58z0_ybx632_h14m0000gq/T/tmp5uemdb2k/src.macosx-10.9-x86_64-3.7/fortranobject.c >> In file included from >> >> /opt/local/lib/gcc10/gcc/x86_64-apple-darwin20/10.2.0/include-fixed/syslimits.h:7, >> from >> >> /opt/local/lib/gcc10/gcc/x86_64-apple-darwin20/10.2.0/include-fixed/limits.h:34, >> from >> /Users/user/opt/anaconda3/include/python3.7m/Python.h:11, >> from >> >> /var/folders/2r/4bw6nw0x58z0_ybx632_h14m0000gq/T/tmp5uemdb2k/src.macosx-10.9-x86_64-3.7/sofapymodule.c:14: >> /opt/local/lib/gcc10/gcc/x86_64-apple-darwin20/10.2.0/include-fixed/limits.h:195:61: >> >> error: no include path in which to search for limits.h >> 195 | #include_next <limits.h> /* recurse down to the real one */ >> | ^ >> In file included from >> /Users/user/opt/anaconda3/include/python3.7m/Python.h:25, >> from >> >> /var/folders/2r/4bw6nw0x58z0_ybx632_h14m0000gq/T/tmp5uemdb2k/src.macosx-10.9-x86_64-3.7/sofapymodule.c:14: >> /opt/local/lib/gcc10/gcc/x86_64-apple-darwin20/10.2.0/include-fixed/stdio.h:78:10: >> >> fatal error: _stdio.h: No such file or directory >> 78 | #include <_stdio.h> >> | ^~~~~~~~~~ >> compilation terminated. >> >> Any suggestions? >> >> Sam Dupree. >> >> >> _______________________________________________ >> NumPy-Discussion mailing list >> NumPy-Discussion@python.org >> https://mail.python.org/mailman/listinfo/numpy-discussion >> > > _______________________________________________ > NumPy-Discussion mailing > listNumPy-Discussion@python.orghttps://mail.python.org/mailman/listinfo/numpy-discussion > > >
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