Here are some more complete tests on my assorted Macs.
Note that on the dual G5 tower, /usr/local/lib/libgfortran.2.dylib
seems to be missing, under both Tiger (10.4.11) and Leopard (10.5.2).
However, under both operating systems, /usr/local/gfortran/lib/
libgfortran.2.dylib exists, as does /usr/local/lib/libgfortran.3.dylib.
There is a soft link from /usr/local/lib/libgfortran.dylib to /usr/
local/lib/libgfortran.3.dylib . Should numpy be looking for
libgfortran.dylib rather than libgfortran.2.dylib? (I'm just
guessing; I have no idea why the file is needed.)
Bob Pyle
#################################
700 MHz G3 iBook, OSX 10.4.11:
Python 2.5.2 (r252:60911, Feb 22 2008, 07:57:53)
[GCC 4.0.1 (Apple Computer, Inc. build 5363)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import numpy as np
>>> np.test(all=True)
Numpy is installed in /Library/Frameworks/Python.framework/Versions/
2.5/lib/python2.5/site-packages/numpy
Numpy version 1.1.0rc1
Python version 2.5.2 (r252:60911, Feb 22 2008, 07:57:53) [GCC 4.0.1
(Apple Computer, Inc. build 5363)]
[ ... many successful tests ... ]
Failed importing /Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/numpy/ma/tests/test_morestats.py: No module
named scipy.stats.distributions
[ ... more successful tests ... ]
............................................./Library/Frameworks/
Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/core/
ma.py:609: UserWarning: Cannot automatically convert masked array to
numeric because data
is masked in one or more locations.
warnings.warn("Cannot automatically convert masked array to "\
E.......................................................................
........................................................................
........................................................................
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................E...................
======================================================================
ERROR: check_testUfuncRegression (numpy.core.tests.test_ma.TestUfuncs)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/numpy/core/tests/test_ma.py", line 691, in
check_testUfuncRegression
self.failUnless(eq(ur.filled(0), mr.filled(0), f))
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/numpy/ma/core.py", line 1556, in filled
result = self._data.copy()
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/numpy/ma/core.py", line 1478, in _get_data
return self.view(self._baseclass)
TypeError: Cannot change data-type for object array.
======================================================================
ERROR: check_testUfuncRegression (numpy.ma.tests.test_old_ma.TestUfuncs)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/numpy/ma/tests/test_old_ma.py", line 657, in
check_testUfuncRegression
uf = getattr(umath, f)
NameError: global name 'umath' is not defined
----------------------------------------------------------------------
Ran 1215 tests in 14.448s
FAILED (errors=2)
<unittest._TextTestResult run=1215 errors=2 failures=0>
#################################
Dual G5 tower, OSX 10.4.11:
~ $ python
Python 2.5.2 (r252:60911, Feb 22 2008, 07:57:53)
[GCC 4.0.1 (Apple Computer, Inc. build 5363)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import numpy as np
>>> np.test(all=True)
Numpy is installed in /Library/Frameworks/Python.framework/Versions/
2.5/lib/python2.5/site-packages/numpy
Numpy version 1.1.0rc1
Python version 2.5.2 (r252:60911, Feb 22 2008, 07:57:53) [GCC 4.0.1
(Apple Computer, Inc. build 5363)]
[ ... many successful tests ... ]
Failed importing /Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/numpy/ma/tests/test_morestats.py: dlopen(/
Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-
packages/scipy/special/_cephes.so, 2): Library not loaded: /usr/local/
lib/libgfortran.2.dylib
Referenced from: /Library/Frameworks/Python.framework/Versions/2.5/
lib/python2.5/site-packages/scipy/special/_cephes.so
Reason: image not found
[ ... more successful tests ... ]
............................................./Library/Frameworks/
Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/core/
ma.py:609: UserWarning: Cannot automatically convert masked array to
numeric because data
is masked in one or more locations.
warnings.warn("Cannot automatically convert masked array to "\
E.......................................................................
........................................................................
........................................................................
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................E...................
======================================================================
ERROR: check_testUfuncRegression (numpy.core.tests.test_ma.TestUfuncs)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/numpy/core/tests/test_ma.py", line 691, in
check_testUfuncRegression
self.failUnless(eq(ur.filled(0), mr.filled(0), f))
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/numpy/ma/core.py", line 1556, in filled
result = self._data.copy()
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/numpy/ma/core.py", line 1478, in _get_data
return self.view(self._baseclass)
TypeError: Cannot change data-type for object array.
======================================================================
ERROR: check_testUfuncRegression (numpy.ma.tests.test_old_ma.TestUfuncs)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/numpy/ma/tests/test_old_ma.py", line 657, in
check_testUfuncRegression
uf = getattr(umath, f)
NameError: global name 'umath' is not defined
----------------------------------------------------------------------
Ran 1217 tests in 3.004s
FAILED (errors=2)
<unittest._TextTestResult run=1217 errors=2 failures=0>
>>>
#################################
Dual G5 tower, OSX 10.5.2:
~ $ python
Python 2.5.2 (r252:60911, Feb 22 2008, 07:57:53)
[GCC 4.0.1 (Apple Computer, Inc. build 5363)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import numpy as np
>>> np.test(all=True)
Numpy is installed in /Library/Frameworks/Python.framework/Versions/
2.5/lib/python2.5/site-packages/numpy
Numpy version 1.1.0rc1
Python version 2.5.2 (r252:60911, Feb 22 2008, 07:57:53) [GCC 4.0.1
(Apple Computer, Inc. build 5363)]
[ ... many successful tests ... ]
Failed importing /Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/numpy/ma/tests/test_morestats.py: dlopen(/
Library/Frameworks/Python.framework/Versions/2.5/lib/python2.5/site-
packages/scipy/special/_cephes.so, 2): Library not loaded: /usr/local/
lib/libgfortran.2.dylib
Referenced from: /Library/Frameworks/Python.framework/Versions/2.5/
lib/python2.5/site-packages/scipy/special/_cephes.so
Reason: image not found
[ ... more successful tests ... ]
........................................................................
........................................................................
........................................................................
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................E...................
======================================================================
ERROR: check_testUfuncRegression (numpy.ma.tests.test_old_ma.TestUfuncs)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/numpy/ma/tests/test_old_ma.py", line 657, in
check_testUfuncRegression
uf = getattr(umath, f)
NameError: global name 'umath' is not defined
----------------------------------------------------------------------
Ran 1179 tests in 4.035s
FAILED (errors=1)
<unittest._TextTestResult run=1179 errors=1 failures=0>
>>>
#################################
MacBook Pro, Intel Core Duo, OSX 10.5.2:
Last login: Sun Apr 20 13:44:38 on console
~ $ python
Python 2.5.2 (r252:60911, Feb 22 2008, 07:57:53)
[GCC 4.0.1 (Apple Computer, Inc. build 5363)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import numpy as np
>>> np.test(all=True)
Numpy is installed in /Library/Frameworks/Python.framework/Versions/
2.5/lib/python2.5/site-packages/numpy
Numpy version 1.1.0rc1
Python version 2.5.2 (r252:60911, Feb 22 2008, 07:57:53) [GCC 4.0.1
(Apple Computer, Inc. build 5363)]
[ ... many successful tests ... ]
............................................./Library/Frameworks/
Python.framework/Versions/2.5/lib/python2.5/site-packages/numpy/core/
ma.py:608: UserWarning: Cannot automatically convert masked array to
numeric because data
is masked in one or more locations.
warnings.warn("Cannot automatically convert masked array to "\
E.......................................................................
........................................................................
...........................................................E............
.....................................................................................................................................................................................................................................................................................................................................................E......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................E...................
======================================================================
ERROR: check_testUfuncRegression (numpy.core.tests.test_ma.test_ufuncs)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/numpy/core/tests/test_ma.py", line 691, in
check_testUfuncRegression
self.failUnless(eq(ur.filled(0), mr.filled(0), f))
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/numpy/ma/core.py", line 1556, in filled
result = self._data.copy()
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/numpy/ma/core.py", line 1478, in _get_data
return self.view(self._baseclass)
TypeError: Cannot change data-type for object array.
======================================================================
ERROR: Ticket #396
----------------------------------------------------------------------
Traceback (most recent call last):
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/numpy/core/tests/test_regression.py", line
600, in check_poly1d_nan_roots
self.failUnlessRaises(np.linalg.LinAlgError,getattr,p,"r")
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/unittest.py", line 320, in failUnlessRaises
callableObj(*args, **kwargs)
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/numpy/lib/polynomial.py", line 661, in
__getattr__
return roots(self.coeffs)
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/numpy/lib/polynomial.py", line 124, in roots
roots = _eigvals(A)
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/numpy/lib/polynomial.py", line 40, in _eigvals
return eigvals(arg)
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/scipy/linalg/decomp.py", line 378, in eigvals
return eig(a,b=b,left=0,right=0,overwrite_a=overwrite_a)
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/scipy/linalg/decomp.py", line 128, in eig
a1 = asarray_chkfinite(a)
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/numpy/lib/function_base.py", line 415, in
asarray_chkfinite
raise ValueError, "array must not contain infs or NaNs"
ValueError: array must not contain infs or NaNs
======================================================================
ERROR: Ticket #396
----------------------------------------------------------------------
Traceback (most recent call last):
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/numpy/core/tests/test_regression.py", line
600, in check_poly1d_nan_roots
self.failUnlessRaises(np.linalg.LinAlgError,getattr,p,"r")
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/unittest.py", line 320, in failUnlessRaises
callableObj(*args, **kwargs)
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/numpy/lib/polynomial.py", line 661, in
__getattr__
return roots(self.coeffs)
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/numpy/lib/polynomial.py", line 124, in roots
roots = _eigvals(A)
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/numpy/lib/polynomial.py", line 37, in _eigvals
return eigvals(arg)
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/scipy/linalg/decomp.py", line 378, in eigvals
return eig(a,b=b,left=0,right=0,overwrite_a=overwrite_a)
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/scipy/linalg/decomp.py", line 128, in eig
a1 = asarray_chkfinite(a)
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/numpy/lib/function_base.py", line 415, in
asarray_chkfinite
raise ValueError, "array must not contain infs or NaNs"
ValueError: array must not contain infs or NaNs
======================================================================
ERROR: check_testUfuncRegression (numpy.ma.tests.test_old_ma.TestUfuncs)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/Library/Frameworks/Python.framework/Versions/2.5/lib/
python2.5/site-packages/numpy/ma/tests/test_old_ma.py", line 657, in
check_testUfuncRegression
uf = getattr(umath, f)
NameError: global name 'umath' is not defined
----------------------------------------------------------------------
Ran 1221 tests in 3.267s
FAILED (errors=4)
<unittest._TextTestResult run=1221 errors=4 failures=0>
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