On Tue, May 29, 2012 at 9:52 AM, My Th <rei4...@gmail.com> wrote:
> O , 2012-05-29 09:24 -0700, Craig James rakstīja:
> > On Mon, May 28, 2012 at 3:08 AM, Noel O'Boyle <baoille...@gmail.com>
> wrote:
> >
> > > > Now I've checked the tautomer tests, and it also fails with the
> "stock"
> > > > r4758, i.e. before I changed smilesformat.cpp.
> > > >
> > > > $ bin/test_tautomer
> > > >
> > > >
> /home/cjames/openbabel-2.3.x-r4758/source/test/tautomertest.cpp:76:
> > > > canonicalTautomers.size() == 1 [13 == 1] (FAIL)
> > >
> > > I think there's something wrong with your setup because if you go back
> > > in time on the dashboard you can see that the tests passed until last
> > > week. I typically run the tests with "ctest -R taut* -VV", which sets
> > > some environment variables and then runs the test from the correct
> > > directory with verbose output.
> > >
> >
> > Hmmm ... something isn't adding up. I double-checked that I have an
> > unaltered OpenBabel source tree at revision 4758.
> >
> > $ svn diff -r4758
> > $
> >
> > I.e. it's a completely stock version of OpenBabel 2.3.x. I'm using
> Ubuntu
> > 10.04 ("stable") release, fully updated. I don't have any environment
> > variables set that would affect OpenBabel. After "make install", I ran
> > "ctest -R '.*' -VV" and got lots of segfaults (see summary below).
>
> Hi!
>
> It is probably your setup. I just did a bisect on this issue and it
> points to r4763, before that all tests pass:
>
Let me make it clear: I started with a completely clean, unaltered version
r4758 ("svn diff -r4758" confirms that my source code is completely
unaltered) in a fresh directory all by itself. I removed all OpenBabel
binaries from my system. I ran cmake, then "make install", then "make
test." It failed.
I don't know why my results are different than the build platform, but I'm
virtually certain that the test failures are not due to an error or
misconfiguration on my part.
Craig
> b33e496e2280af0d20f1e227aca2fa112e929546 is the first bad commit
> commit b33e496e2280af0d20f1e227aca2fa112e929546
> Author: cjames53 <cjames53@71e0b675-c112-0410-beda-96664073b5c2>
> Date: Thu May 24 15:07:27 2012 +0000
>
> Removed a full-molecule-copy operation that was (apparently) added
> by accident. It caused the molecule to be copied, and forced
> aromaticity to be recomputed, each time a SMILES was created.
>
> git-svn-id:
>
> https://openbabel.svn.sourceforge.net/svnroot/openbabel/openbabel/trunk@4763
>
> Did you run make clean before rebuilding?
>
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