On Tue, May 29, 2012 at 11:42 AM, My Th <rei4...@gmail.com> wrote:
> > I don't know why my results are different than the build platform, but
> > I'm virtually certain that the test failures are not due to an error
> > or misconfiguration on my part.
>
> I made a fresh checkout just now and it works for me on Gentoo. This is
> what I did:
> $ svn co https://openbabel.svn.sourceforge.net/svnroot/openbabel
> test-svn
> $ cd test-svn
> $ svn co -r4758
> $ cd ..
> $ mkdir build_test-svn
> $ cd build_test-svn
> $ ccmake ../test-svn/openbabel/trunk/
> $ make -j4
> $ LD_LIBRARY_PATH=./lib/ BABEL_LIBDIR=./lib/
> BABEL_DATADIR=../test-svn/openbabel/trunk/data/ make test
>
> Note, that I have to set paths (and they have to be absolute, here
> listed relative for briefness) for running tests otherwise it picks up
> my system installation and tautomer test segfaults because of ABI break.
Stranger and stranger .... It works when I run it from the build directory
(as you suggest). But, now things get weird:
- clean out the install directory ("rm -rf $HOME/openbabel-2.3.x/*")
- verify that it's empty
- "make install"
- verify that it's installed in $HOME/openbabel-2.3.x
- export LD_LIBRARY_PATH=$HOME/openbabel-2.3.x/lib
Then it segfaults:
$ bin/test_automorphism
testAutomorphisms
8
Hao, Xu paper, fig. 2: structure 1
Hao, Xu paper, fig. 2: structure 2
Hao, Xu paper, fig. 2: structure 3
Hao, Xu paper, fig. 2: structure 4
Hao, Xu paper, fig. 2: structure 5
Hao, Xu paper, fig. 2: structure 6
Hao, Xu paper, fig. 2: structure 7
Hao, Xu paper, fig. 2: structure 8
Hao, Xu paper, fig. 2: structure 9
Segmentation fault
The odd thing is that if I try to checksum the installed libraries, the
checksums on the libraries it installs don't match the ones in the build
directory. Does the cmake(1) system alter the shared objects as it
installs them?
I'd sure appreciate any ideas anyone has on this -- I've spent days
tracking this down, and it has nothing to do with what I'm trying to get
done.
Craig
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