Dear Sirs,
Thank you for your great info.
Based on it, I have written the final project proposal:
The Summer of Code submission:
Name
Jo�o Paulo Penteado Leite Samara
Email
Primary: [EMAIL PROTECTED]
Secondary: [EMAIL PROTECTED]
Project Title
OSCAR BioInformatics packages and SGE support
Synopsis
Contribute to project OSCAR (http://oscar.openclustergroup.org/)
by adding important software for research environments in the
Biosciences field.
Deliverables
- Create OSCAR packages for all relevant bioinformatics tools that
run on clusters
- Create the Sun Grid Engine package.
Project Details
BioInformatics, a somewhat new and ever growing field, has many
complex algorithms
that can only be handled by powerful clusters.
My main task will be to select several applications of interest and
integrate properly with
OSCAR. This would be of great value to the scientific community.
I will also create and maintain the Sun Grid Engine package, a
software to incorporate/maintain grids under current cluster
infrastructure. This task will probably require coding
on OSCAR's core components.
Scope
The above two tasks can be completed under Google's schedule.
I hope I can continue to improve OSCAR beyond this period.
Bio
I'm an undergraduate in electrical engineering from University of Sao
Paulo, Brazil. I am currently involved FAPESP's
(http://www.fapesp.br/english/index.php) program called
Viral Genetic Diversity Network (VGDN)
(http://www.lemb.icb.usp.br/lemb/vgdn/www/)
which aims to sequence HIV-1, HCV and RSV variants collected across 23
labs in Brazil. I'm currently assisting the design of the main lab
(LEMB) analisys cluster HPC, a 54 cpu-diskless cluster of 2.0Ghz
Opterons, and adapt to our software.
I think that it is a great opportunity for me to learn, help the
university lab, contribute to OSCAR project and get involved on the open
source community in a active way.
--
========================================================
Joao Paulo P. L. Samara, Research Associate
========================================================
University of Sao Paulo - USP
Biomedical Sciences Institute - ICB II
Department of Microbiology
Av. Prof. Lineu Prestes, 1734
Sao Paulo - SP - Brazil - 05508-000
Phone: +55 11 3091-7290
FAX: +55 11 3091-7354
Mobile: +55 11 8121-4293
http://www.lemb.icb.usp.br
========================================================
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