Re: [Oscar-devel] Testing trunk on CentOS 4.2 i386

Fri, 09 Jun 2006 10:57:06 -0700

Hi Doug:
 
Perhaps you can start by putting up a new repository for mpiBLAST for OSCAR5 - I assume you have made modifications to config.xml since the schema is different between OSCAR 5 and OSCAR 4.x.
 
Thanks,
 
Bernard
 
P.S. OSCAR 5 will also support Open MPI, yet another MPI implementation for you to play with regarding mpiBLAST :-)

From: Jennewein, Douglas M [mailto:[EMAIL PROTECTED]
Sent: Friday, June 09, 2006 9:21
To: Bernard Li; [email protected]
Subject: RE: [Oscar-devel] Testing trunk on CentOS 4.2 i386

Hi, Bernard:

 

Unfortunately I have not been able to test the mpiBLAST package on OSCAR 5 for several weeks, but the last time I did it was working with Torque, but not SGE.

 

Doug Jennewein
Research Analyst
Department of Computer Science
University of South Dakota
Vermillion, SD 57069
(605) 677-5388
(605) 677-6662 (fax)
[EMAIL PROTECTED]

From: Bernard Li [mailto:[EMAIL PROTECTED]
Sent: Friday, June 09, 2006 10:54 AM
To: Jennewein, Douglas M; [email protected]
Subject: RE: [Oscar-devel] Testing trunk on CentOS 4.2 i386

 

Hi Doug:

 

Thanks for testing!

 

Yes, currently PVM does not work under SGE - I'm having quite a bit of problem pinpointing the exact issues so if you figure it out, please let me know :-)

 

Anyways, I believe the reason why tests failed for other libraries afterwards is because one of the nodes was marked as in the "Error" state (and therefore you no longer have enough nodes to test...)  You should be able to find that out using the command "qhost" (it will be marked with an "E").  You should also be able to see that via qmon in queue status.

 

P.S. Did you have a chance to test mpiBLAST under OSCAR 5.0?

 

Cheers,

 

Bernard

 

From: [EMAIL PROTECTED] on behalf of Jennewein, Douglas M
Sent: Fri 09/06/2006 08:12
To: [email protected]
Subject: [Oscar-devel] Testing trunk on CentOS 4.2 i386

Hello,

 

I have been testing the 20060605 build of OSCAR5 on CentOS 4.2 i386.  Installation and testing worked fine using torque, but when I tried using SGE, the PVM (via SGE) test failed.  I ran the cluster tests again and MPICH, LAM/MPI, Open MPI, and PVM tests all failed via SGE.

 

I set OSCAR_VERBOSE=5 and have saved my oscarinstall.log and a typescript of the install session, but they’re both about 4MB, so I wasn’t able to attach them to this message.  Has anyone else had problems with SGE tests?

 

 

Doug Jennewein
Research Analyst
Department of Computer Science
University of South Dakota
Vermillion, SD 57069
(605) 677-5388
(605) 677-6662 (fax)
[EMAIL PROTECTED]

 

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