Michael:
I followed the directions for installing from source and used Bill
Scott's tweak (both links below). Everything seems to be running fine.
I am a bit short of memory using my Al G4PB, but everything configured
and complied with no problems. I have only used APBS with the Pymol
plugin but it seems to run fine. Slow but fine.
http://agave.wustl.edu/apbs/doc/html/user-guide/x122.html
http://chips.csb.ki.se/pymol/msg02192.html
I created the directory /usr/local/APBS. Then made all the directories
the instructions called for within the APBS directory I created. The
psize.py script ended up in
/usr/local/APBS/src/apbs-0.3.1/tools/manip/psize.py
Alex
On Sep 2, 2004, at 8:36 AM, Michael George Lerner wrote:
Hi,
I don't have a Mac, so I can't really help you here .. I know there are
quite a few people on the PyMOL list who've gotten APBS to work on
Macs,
though, so maybe one of them will chime in. If you don't get help
here,
you can probably get some more advice on the APBS mailing list. In
case
you didn't sign up when you downloaded APBS, the webpage is
http://cholla.wustl.edu/mailman/listinfo/apbs-users
Once you get APBS installed, the APBS+PyMOL plugin should just work (it
doesn't really need APBS's psize.py).
But .. can anyone who has installed APBS on this platform tell me where
APBS puts psize.py? I'd like to list that on my webpage.
Thanks,
-michael
--
This isn't a democracy;| _ |Michael Lerner
it's a cheer-ocracy. | ASCII ribbon campaign ( ) | Michigan
-Torrence, Bring It On| - against HTML email X | Biophysics
| / \ | mler...@umich
On Wed, 1 Sep 2004, Ann Mullin wrote:
Hi,
All I want to do is be able to create an electrostatic surface
representation of a simple molecule.
I am seriously overwhelmed by the information for compiling and
setting
APBS on their website. I was happy to fine a link to download a
package with an installer, but when I run it it fails at the very end
and tells me to try installing again. Also, is there any place that I
should be installing this? I tried in the Applications folder and in
the folder I made to surround PyMOL and it's user manual.
I also notice that there is a binary ready to use for G5 on the
website, but where do I put this to work, and where is the psize.py
file. I rarely work on a UNIX platform and I have a very hard time
switching from macOS to UNIX and back, since macOS is almost all point
and click.
Thanks for any help. Ann
Ann Mullin
Research Scientist
Cell and Molecular Biology Dept.
Tulane University
New Orleans, LA 70118-5698
504-865-6742 (Ph)
504-865-6785 (FAX)
amul...@tulane.edu
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