Hi Tom, Does what you're trying to do come down to:
alter all, vdw=b/100 show spheres ? Cheers, Tsjerk On Fri, Feb 22, 2008 at 1:42 AM, Thomas Stout <tst...@exelixis.com> wrote: > > > Hi All -- > > Yes, I know I want to do something silly here, but does anyone know of a > "jiffy" that will generate anisotropic thermal parameters for an isotropic > atom? > > My end goal is to create a figure showing a ligand as ball-and-stick where > the spheres are scaled by the B-factor. Since I'm not dealing with > ultra-high resolution data, I just have normal isotropic atoms. I'd like to > use the new "ellipsoids" functionality in PyMOL, but it requires anisotropic > atom lines. Obviously, I could write a python script that would scale the > vdW radii by some normalization of the B-factor, but I thought I could be > lazy and use what Warren has already built into PyMOL..... > > Thanks! > -Tom > > PS -- I'm thinking of something like the "-iso" feature of rastep in Ethan > Merritt's Raster3D suite...... > > This email (including any attachments) may contain material > that is confidential and privileged and is for the sole use of > the intended recipient. Any review, reliance or distribution by > others or forwarding without express permission is strictly > prohibited. If you are not the intended recipient, please > contact the sender and delete all copies. > > > Exelixis, Inc. reserves the right, to the extent and under > circumstances permitted by applicable law, to retain, monitor > and intercept e-mail messages to and from its systems. > > > > ------------------------------------------------------------------------- > This SF.net email is sponsored by: Microsoft > Defy all challenges. Microsoft(R) Visual Studio 2008. > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > _______________________________________________ > PyMOL-users mailing list > PyMOL-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/pymol-users > > -- Tsjerk A. Wassenaar, Ph.D. Junior UD (post-doc) Biomolecular NMR, Bijvoet Center Utrecht University Padualaan 8 3584 CH Utrecht The Netherlands P: +31-30-2539931 F: +31-30-2537623
