Hi Simon, On Mon, 08 Mar 2010 18:09:31 +0100 Simon Lindhoud <simon.lindh...@wur.nl> wrote:
> Dear all, > > Unfortunately I'm not really familiar with programming in Python (yet) but > I've encountered a problem with MacPyMol in running the script that can be > found here: > http://cavanagh-lab.bch.ncsu.edu/bobay/intranet/pymol/data2bfactor.py That is a slightly older version of my script, although I don't believe that is the problem. > I've tried a couple of things to get the script running, and in the end I > managed to narrow the problem down to the fact that the file that contains > the data for the new b-factors is not imported correctly. I have made a text > file, containing four columns that I've copied from excel; the Chain, the > residue number, the residue name, and the b-factor. These columns are > separated by tabs. In the script this code is used to determine the number > of columns in my file: > > words = line.split() > > # check number of columns of data > if len(words) == 4: > etc > > Apparently, this is where it goes wrong because if I print the words > variable. I get the total number 'words' in my input file instead of the > number of columns... > Does anybody know the solution to this problem? It sounds like the file as it is read by the script is completely on one line. I wonder if this is the old UNIX vs MSDOS line ending problem. Did the data file happen to come from a Windows computer? Cheers, Rob -- Robert L. Campbell, Ph.D. Senior Research Associate/Adjunct Assistant Professor Botterell Hall Rm 644 Department of Biochemistry, Queen's University, Kingston, ON K7L 3N6 Canada Tel: 613-533-6821 Fax: 613-533-2497 <robert.campb...@queensu.ca> http://pldserver1.biochem.queensu.ca/~rlc ------------------------------------------------------------------------------ Download Intel® Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
