It's very useful. How about RNA/DNA sequence? Thanks in advance,
Keitaro 2010/12/10 Jason Vertrees <[email protected]>: > Hi Julio, > >> I'm using PyMOL 1.3 and I would like to select one specific part of the >> molecule based on a peptide sequence that it is presented in protein. Is >> there any way to select subsequences in PyMOL? >> >> Protein sequence: >> >> ...SMVADLTQATFTKEGKTQKVVDVLDHDYVFDTFFK... >> >> Peptide: >> >> GKTQKV > > Use the 'ps.' (peptide sequence) modifier: > > select targetSeq, ps. GKTQKV > > Cheers, > > -- Jason > > -- > Jason Vertrees, PhD > PyMOL Product Manager > Schrodinger, LLC > > (e) [email protected] > (o) +1 (603) 374-7120 > > ------------------------------------------------------------------------------ > _______________________________________________ > PyMOL-users mailing list ([email protected]) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/[email protected] > ------------------------------------------------------------------------------ _______________________________________________ PyMOL-users mailing list ([email protected]) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/[email protected]
