Hi Keitaro, Code has been started for "nucseq" and the shorthand "ns.". I think it was not completed because at first glance it appears less than straightforward: "ps." searches for the one-letter residue names, but "ns." would have to map one-letter codes to those commonly used in the data, "DA" "DT", etc.
Cheers, -- Jason On Fri, Dec 10, 2010 at 1:48 AM, Keitaro Yamashita <yamash...@castor.sci.hokudai.ac.jp> wrote: > It's very useful. > How about RNA/DNA sequence? > > Thanks in advance, > > Keitaro > > 2010/12/10 Jason Vertrees <jason.vertr...@schrodinger.com>: >> Hi Julio, >> >>> I'm using PyMOL 1.3 and I would like to select one specific part of the >>> molecule based on a peptide sequence that it is presented in protein. Is >>> there any way to select subsequences in PyMOL? >>> >>> Protein sequence: >>> >>> ...SMVADLTQATFTKEGKTQKVVDVLDHDYVFDTFFK... >>> >>> Peptide: >>> >>> GKTQKV >> >> Use the 'ps.' (peptide sequence) modifier: >> >> select targetSeq, ps. GKTQKV >> >> Cheers, >> >> -- Jason >> >> -- >> Jason Vertrees, PhD >> PyMOL Product Manager >> Schrodinger, LLC >> >> (e) jason.vertr...@schrodinger.com >> (o) +1 (603) 374-7120 >> >> ------------------------------------------------------------------------------ >> _______________________________________________ >> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >> > > ------------------------------------------------------------------------------ > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Oracle to DB2 Conversion Guide: Learn learn about native support for PL/SQL, new data types, scalar functions, improved concurrency, built-in packages, OCI, SQL*Plus, data movement tools, best practices and more. http://p.sf.net/sfu/oracle-sfdev2dev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
