Thanks Joseph and Thomas for your replies. When I use the "as cartoon" commands, all my molecule disappear. My *pdb file could be the problem as it is a *cif crystal structure file (converted with mercury) from the cambridge crystal data.
Cheers, Baptiste 2011/8/16 Thomas Holder <spel...@users.sourceforge.net> > Hi Baptiste, > > > I have a small helical pseudopeptide with mixed alpha and beta >> amino-acids. How can I make a cartoon representation of this helix with >> Pymol? For the moment, I have selected the peptide backbone atoms and tried >> the "alter" command to force pymol to recognize the helix but it do not >> work. >> > > are you sure? What happens if you try this: > > alter all, ss='H' > as cartoon > rebuild > > Cheers, > Thomas > > -- > Thomas Holder > MPI for Developmental Biology > Spemannstr. 35 > D-72076 Tübingen >
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