Hey, I noticed with coarse grained structures that cartoon_trace_atoms really traces all atoms; you may need to restrict the selection:
set cartoon_trace_atoms show cartoon, n. ca+cb Hope it helps, Tsjerk On Wed, Aug 17, 2011 at 1:24 AM, Jason Vertrees <jason.vertr...@schrodinger.com> wrote: > Hi Baptiste, > >> My pymol version is the 0.99rc6 on windows 7, the graphic card on my laptop >> is an ATI Mobility Radeon HD 5650. I'm trying to reproduce the >> representation on the page 7 of this article (in copy). > > I looked at the file you sent and even tried some tricks to force it > to work. However, that converted PDB file is unusable--it's too > non-standard. PyMOL's really confused on connectivity, geometry, and > numbering. For example, there're 146 atoms but only one residue. Can > you please try fixing the file and try again? To give you an example > of how badly arrange the file is try, > > set cartoon_trace_atoms > > show cartoon > > The atom trace is all over the place. > > I'm happy to revisit this if you can improve the file. > > Cheers, > > -- Jason > > -- > Jason Vertrees, PhD > PyMOL Product Manager > Schrodinger, LLC > > (e) jason.vertr...@schrodinger.com > (o) +1 (603) 374-7120 > > ------------------------------------------------------------------------------ > Get a FREE DOWNLOAD! and learn more about uberSVN rich system, > user administration capabilities and model configuration. Take > the hassle out of deploying and managing Subversion and the > tools developers use with it. http://p.sf.net/sfu/wandisco-d2d-2 > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- Tsjerk A. Wassenaar, Ph.D. post-doctoral researcher Molecular Dynamics Group * Groningen Institute for Biomolecular Research and Biotechnology * Zernike Institute for Advanced Materials University of Groningen The Netherlands ------------------------------------------------------------------------------ Get a FREE DOWNLOAD! and learn more about uberSVN rich system, user administration capabilities and model configuration. Take the hassle out of deploying and managing Subversion and the tools developers use with it. http://p.sf.net/sfu/wandisco-d2d-2 _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
