Hi,

The Tsjerk's solution works without modify the exotic *pdb file. :)

set cartoon_trace_atoms
select cacb, name c5+c6+c10+c12+c16+c19+c23+c25+c29+c32+c36+c38
alter cacb, ss='H'
show cartoon, cacb

Thanks all,
Baptiste




Le 17/08/2011 05:48, Tsjerk Wassenaar a écrit :
> Hey,
>
> I noticed with coarse grained structures that cartoon_trace_atoms
> really traces all atoms; you may need to restrict the selection:
>
> set cartoon_trace_atoms
> show cartoon, n. ca+cb
>
> Hope it helps,
>
> Tsjerk
>
> On Wed, Aug 17, 2011 at 1:24 AM, Jason Vertrees
> <jason.vertr...@schrodinger.com>  wrote:
>> Hi Baptiste,
>>
>>> My pymol version is the 0.99rc6 on windows 7, the graphic card on my laptop
>>> is an ATI Mobility Radeon HD 5650. I'm trying to reproduce the
>>> representation on the page 7 of this article (in copy).
>> I looked at the file you sent and even tried some tricks to force it
>> to work. However, that converted PDB file is unusable--it's too
>> non-standard. PyMOL's really confused on connectivity, geometry, and
>> numbering. For example, there're 146 atoms but only one residue. Can
>> you please try fixing the file and try again? To give you an example
>> of how badly arrange the file is try,
>>
>> set cartoon_trace_atoms
>>
>> show cartoon
>>
>> The atom trace is all over the place.
>>
>> I'm happy to revisit this if you can improve the file.
>>
>> Cheers,
>>
>> -- Jason
>>
>> --
>> Jason Vertrees, PhD
>> PyMOL Product Manager
>> Schrodinger, LLC
>>
>> (e) jason.vertr...@schrodinger.com
>> (o) +1 (603) 374-7120
>>
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>


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