Pymol 1.3 is still available online, but it doesn't work with any versions
of python greater than 2.5. If I try to install Pymol 1.4 doesn't work
when I install it (problems with the GLEW library). I don't understand
that problem either. It looks like it can't find GLEW, but I know that its
path is included (see code below). I have never tried compiling pymol from
source before, so I have never gotten it to work. And I reinstalled my
GLUT library and rebuilt, but that did not fix the crashing problem in my
original post. Any more suggestions? Thanks!
~Lauren
...
warning: implicit declaration of function ‘glewInit’
layer0/ShaderMgr.c:173: error: ‘GLEW_OK’ undeclared (first use in this
function)
layer0/ShaderMgr.c:173: error: (Each undeclared identifier is reported only
once
layer0/ShaderMgr.c:173: error: for each function it appears in.)
layer0/ShaderMgr.c:174: error: ‘GLEW_VERSION_2_0’ undeclared (first use in
this function)
layer0/ShaderMgr.c:185: warning: implicit declaration of function
‘glewGetErrorString’
...
2011/12/19 Troels Emtekær Linnet <tlin...@gmail.com>
> Ok, maybe I am not the right person to ask.
>
> But.
> How did you get Pymol 1.3 ?
> The one in the subversion repo is 1.4.1
>
> And it looks like you have python 2.5
> I dont know if PyMOL needs python 2.7
>
> Have you compiled before, where it worked?
>
> Best
> T
>
>
> Troels Emtekær Linnet
> Slotsvej 2
> 4300 Holbæk
> Mobil: +45 60210234
>
>
>
> 2011/12/19 Lauren Porter <lauren.pers...@gmail.com>
>
>> Yes, I have GLUT installed (I'm using the framework), and I rerouted
>> everything to make sure it was pointing to the right path. After doing
>> that, I rebuilt and got a new error:
>>
>>
>> Python 2.5.4 (r254:67916, Aug 1 2011, 15:52:49)
>> [GCC 4.2.1 (Apple Inc. build 5646)] on darwin
>> Type "help", "copyright", "credits" or "license" for more information.
>> >>> import pymol
>> Traceback (most recent call last):
>> File "<stdin>", line 1, in <module>
>> File "/Library/Python/2.5/site-packages/pymol/__init__.py", line 473,
>> in <module>
>> import _cmd
>> ImportError: dlopen(/Library/Python/2.5/site-packages/pymol/_cmd.so, 2):
>> Symbol not found: _FT_Done_Face
>> Referenced from: /Library/Python/2.5/site-packages/pymol/_cmd.so
>> Expected in: flat namespace
>> in /Library/Python/2.5/site-packages/pymol/_cmd.so
>>
>>
>>
>> I read that this is because of a problem with the freetype 2 library, but
>> I included the library's path in the setup file, so I have no idea what
>> else to do. Any ideas? Thanks!
>>
>> ~Lauren
>>
>>
>> 2011/12/19 Troels Emtekær Linnet <tlin...@gmail.com>
>>
>>> 2011-12-19 12:32:21.901 Python[243:5d03] *** Terminating app due to
>>> uncaught exception 'NSInvalidArgumentException', reason*:
>>> '-[GLUTApplication _setup:]:* unrecognized
>>> --------------------------------------
>>>
>>>
>>> Do you have glut installed ?
>>>
>>> http://www.pymolwiki.org/index.php/Linux_Install#Requirements
>>>
>>> freeglut3-dev
>>>
>>>
>>> Best
>>> Troels
>>>
>>>
>>>
>>> 2011/12/19 Lauren Porter <lauren.pers...@gmail.com>
>>>
>>>> Hi Everyone,
>>>>
>>>> I've compiled and installed pymol 1.3 on my Mac (OS 10.6 running
>>>> Snow Leopard), but pymol keeps crashing. The compilation looks clean, so I
>>>> have no idea why it's giving me trouble. I have pasted the details below.
>>>> Any help would be much appreciated. Thanks!
>>>>
>>>> ~Lauren
>>>>
>>>> Python 2.5.4 (r254:67916, Aug 1 2011, 15:52:49)
>>>> [GCC 4.2.1 (Apple Inc. build 5646)] on darwin
>>>> Type "help", "copyright", "credits" or "license" for more information.
>>>> >>> import pymol
>>>> >>> pymol.finish_launching()
>>>> >>> 2011-12-19 12:32:21.895 Python[243:5d03] -[GLUTApplication
>>>> _setup:]: unrecognized selector sent to instance 0x1805490
>>>> 2011-12-19 12:32:21.898 Python[243:5d03] An uncaught exception was
>>>> raised
>>>> 2011-12-19 12:32:21.899 Python[243:5d03] -[GLUTApplication _setup:]:
>>>> unrecognized selector sent to instance 0x1805490
>>>> selector sent to instance 0x1805490'
>>>> *** Call stack at first throw:
>>>> (
>>>> 0 CoreFoundation 0x906e36ca __raiseError +
>>>> 410
>>>> 1 libobjc.A.dylib 0x990c15a9
>>>> objc_exception_throw + 56
>>>> 2 CoreFoundation 0x9073090b
>>>> -[NSObject(NSObject) doesNotRecognizeSelector:] + 187
>>>> 3 CoreFoundation 0x90689c06 ___forwarding___
>>>> + 950
>>>> 4 CoreFoundation 0x906897d2
>>>> _CF_forwarding_prep_0 + 50
>>>> 5 Tk 0x17e11ea8 TkpInit + 601
>>>> 6 Tk 0x17d7d60a
>>>> Tk_PkgInitStubsCheck + 2489
>>>> 7 _tkinter.so 0x01d9afe8 Tcl_AppInit + 130
>>>> 8 _tkinter.so 0x01d9af09 var_perform +
>>>> 2295
>>>> 9 Python 0x0007ad4d
>>>> PyEval_EvalFrameEx + 16241
>>>> 10 Python 0x0007cac6
>>>> PyEval_EvalCodeEx + 1734
>>>> 11 Python 0x000274ce
>>>> PyClassMethod_New + 2213
>>>> 12 Python 0x0000c2a8 PyObject_Call +
>>>> 50
>>>> 13 Python 0x00015db7 PyClass_New +
>>>> 1710
>>>> 14 Python 0x0000c2a8 PyObject_Call +
>>>> 50
>>>> 15 Python 0x00076130
>>>> PyEval_CallObjectWithKeywords + 211
>>>> 16 Python 0x0001566f PyInstance_New +
>>>> 330
>>>> 17 Python 0x0000c2a8 PyObject_Call +
>>>> 50
>>>> 18 Python 0x0007c332
>>>> PyEval_EvalFrameEx + 21846
>>>> 19 Python 0x0007cac6
>>>> PyEval_EvalCodeEx + 1734
>>>> 20 Python 0x000274ce
>>>> PyClassMethod_New + 2213
>>>> 21 Python 0x0000c2a8 PyObject_Call +
>>>> 50
>>>> 22 Python 0x00015db7 PyClass_New +
>>>> 1710
>>>> 23 Python 0x0000c2a8 PyObject_Call +
>>>> 50
>>>> 24 Python 0x00076130
>>>> PyEval_CallObjectWithKeywords + 211
>>>> 25 Python 0x0001566f PyInstance_New +
>>>> 330
>>>> 26 Python 0x0000c2a8 PyObject_Call +
>>>> 50
>>>> 27 Python 0x0007c332
>>>> PyEval_EvalFrameEx + 21846
>>>> 28 Python 0x0007cac6
>>>> PyEval_EvalCodeEx + 1734
>>>> 29 Python 0x00027461
>>>> PyClassMethod_New + 2104
>>>> 30 Python 0x0000c2a8 PyObject_Call +
>>>> 50
>>>> 31 Python 0x0007c363
>>>> PyEval_EvalFrameEx + 21895
>>>> 32 Python 0x0007aedc
>>>> PyEval_EvalFrameEx + 16640
>>>> 33 Python 0x0007aedc
>>>> PyEval_EvalFrameEx + 16640
>>>> 34 Python 0x0007cac6
>>>> PyEval_EvalCodeEx + 1734
>>>> 35 Python 0x000274ce
>>>> PyClassMethod_New + 2213
>>>> 36 Python 0x0000c2a8 PyObject_Call +
>>>> 50
>>>> 37 Python 0x00015db7 PyClass_New +
>>>> 1710
>>>> 38 Python 0x0000c2a8 PyObject_Call +
>>>> 50
>>>> 39 Python 0x00076130
>>>> PyEval_CallObjectWithKeywords + 211
>>>> 40 Python 0x000a3edf initthread + 1756
>>>> 41 libSystem.B.dylib 0x91446259 _pthread_start +
>>>> 345
>>>> 42 libSystem.B.dylib 0x914460de thread_start + 34
>>>> )
>>>> Trace/BPT trap
>>>>
>>>>
>>>>
>>>> ------------------------------------------------------------------------------
>>>> Learn Windows Azure Live! Tuesday, Dec 13, 2011
>>>> Microsoft is holding a special Learn Windows Azure training event for
>>>> developers. It will provide a great way to learn Windows Azure and what
>>>> it
>>>> provides. You can attend the event by watching it streamed LIVE online.
>>>> Learn more at http://p.sf.net/sfu/ms-windowsazure
>>>> _______________________________________________
>>>> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
>>>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
>>>> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
>>>>
>>>
>>>
>>
>
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