Thanks, Lina. It worked beautifully.
On Wed, Dec 21, 2011 at 8:14 AM, lina <lina.lastn...@gmail.com> wrote:
> If you have fink,
>
> you can have an alternative way of installation.
>
> fink install pymol-py27
>
> It works well.
>
> On Wed, Dec 21, 2011 at 4:19 AM, Lauren Porter <lauren.pers...@gmail.com>
> wrote:
> > Pymol 1.3 is still available online, but it doesn't work with any
> versions
> > of python greater than 2.5. If I try to install Pymol 1.4 doesn't work
> when
> > I install it (problems with the GLEW library). I don't understand that
> > problem either. It looks like it can't find GLEW, but I know that its
> path
> > is included (see code below). I have never tried compiling pymol from
> > source before, so I have never gotten it to work. And I reinstalled my
> GLUT
> > library and rebuilt, but that did not fix the crashing problem in my
> > original post. Any more suggestions? Thanks!
> >
> > ~Lauren
> >
> > ...
> > warning: implicit declaration of function ‘glewInit’
> > layer0/ShaderMgr.c:173: error: ‘GLEW_OK’ undeclared (first use in this
> > function)
> > layer0/ShaderMgr.c:173: error: (Each undeclared identifier is reported
> only
> > once
> > layer0/ShaderMgr.c:173: error: for each function it appears in.)
> > layer0/ShaderMgr.c:174: error: ‘GLEW_VERSION_2_0’ undeclared (first use
> in
> > this function)
> > layer0/ShaderMgr.c:185: warning: implicit declaration of function
> > ‘glewGetErrorString’
> > ...
> >
> > 2011/12/19 Troels Emtekær Linnet <tlin...@gmail.com>
> >>
> >> Ok, maybe I am not the right person to ask.
> >>
> >> But.
> >> How did you get Pymol 1.3 ?
> >> The one in the subversion repo is 1.4.1
> >>
> >> And it looks like you have python 2.5
> >> I dont know if PyMOL needs python 2.7
> >>
> >> Have you compiled before, where it worked?
> >>
> >> Best
> >> T
> >>
> >>
> >> Troels Emtekær Linnet
> >> Slotsvej 2
> >> 4300 Holbæk
> >> Mobil: +45 60210234
> >>
> >>
> >>
> >> 2011/12/19 Lauren Porter <lauren.pers...@gmail.com>
> >>>
> >>> Yes, I have GLUT installed (I'm using the framework), and I rerouted
> >>> everything to make sure it was pointing to the right path. After doing
> >>> that, I rebuilt and got a new error:
> >>>
> >>>
> >>> Python 2.5.4 (r254:67916, Aug 1 2011, 15:52:49)
> >>> [GCC 4.2.1 (Apple Inc. build 5646)] on darwin
> >>> Type "help", "copyright", "credits" or "license" for more information.
> >>> >>> import pymol
> >>> Traceback (most recent call last):
> >>> File "<stdin>", line 1, in <module>
> >>> File "/Library/Python/2.5/site-packages/pymol/__init__.py", line 473,
> >>> in <module>
> >>> import _cmd
> >>> ImportError: dlopen(/Library/Python/2.5/site-packages/pymol/_cmd.so,
> 2):
> >>> Symbol not found: _FT_Done_Face
> >>> Referenced from: /Library/Python/2.5/site-packages/pymol/_cmd.so
> >>> Expected in: flat namespace
> >>> in /Library/Python/2.5/site-packages/pymol/_cmd.so
> >>>
> >>>
> >>>
> >>> I read that this is because of a problem with the freetype 2 library,
> but
> >>> I included the library's path in the setup file, so I have no idea
> what else
> >>> to do. Any ideas? Thanks!
> >>>
> >>> ~Lauren
> >>>
> >>>
> >>> 2011/12/19 Troels Emtekær Linnet <tlin...@gmail.com>
> >>>>
> >>>> 2011-12-19 12:32:21.901 Python[243:5d03] *** Terminating app due to
> >>>> uncaught exception 'NSInvalidArgumentException', reason:
> '-[GLUTApplication
> >>>> _setup:]: unrecognized
> >>>> --------------------------------------
> >>>>
> >>>>
> >>>> Do you have glut installed ?
> >>>>
> >>>> http://www.pymolwiki.org/index.php/Linux_Install#Requirements
> >>>>
> >>>> freeglut3-dev
> >>>>
> >>>>
> >>>> Best
> >>>> Troels
> >>>>
> >>>>
> >>>>
> >>>> 2011/12/19 Lauren Porter <lauren.pers...@gmail.com>
> >>>>>
> >>>>> Hi Everyone,
> >>>>>
> >>>>> I've compiled and installed pymol 1.3 on my Mac (OS 10.6 running
> >>>>> Snow Leopard), but pymol keeps crashing. The compilation looks
> clean, so I
> >>>>> have no idea why it's giving me trouble. I have pasted the details
> below.
> >>>>> Any help would be much appreciated. Thanks!
> >>>>>
> >>>>> ~Lauren
> >>>>>
> >>>>> Python 2.5.4 (r254:67916, Aug 1 2011, 15:52:49)
> >>>>> [GCC 4.2.1 (Apple Inc. build 5646)] on darwin
> >>>>> Type "help", "copyright", "credits" or "license" for more
> information.
> >>>>> >>> import pymol
> >>>>> >>> pymol.finish_launching()
> >>>>> >>> 2011-12-19 12:32:21.895 Python[243:5d03] -[GLUTApplication
> >>>>> >>> _setup:]: unrecognized selector sent to instance 0x1805490
> >>>>> 2011-12-19 12:32:21.898 Python[243:5d03] An uncaught exception was
> >>>>> raised
> >>>>> 2011-12-19 12:32:21.899 Python[243:5d03] -[GLUTApplication _setup:]:
> >>>>> unrecognized selector sent to instance 0x1805490
> >>>>> selector sent to instance 0x1805490'
> >>>>> *** Call stack at first throw:
> >>>>> (
> >>>>> 0 CoreFoundation 0x906e36ca __raiseError +
> >>>>> 410
> >>>>> 1 libobjc.A.dylib 0x990c15a9
> >>>>> objc_exception_throw + 56
> >>>>> 2 CoreFoundation 0x9073090b
> >>>>> -[NSObject(NSObject) doesNotRecognizeSelector:] + 187
> >>>>> 3 CoreFoundation 0x90689c06
> ___forwarding___
> >>>>> + 950
> >>>>> 4 CoreFoundation 0x906897d2
> >>>>> _CF_forwarding_prep_0 + 50
> >>>>> 5 Tk 0x17e11ea8 TkpInit + 601
> >>>>> 6 Tk 0x17d7d60a
> >>>>> Tk_PkgInitStubsCheck + 2489
> >>>>> 7 _tkinter.so 0x01d9afe8 Tcl_AppInit +
> >>>>> 130
> >>>>> 8 _tkinter.so 0x01d9af09 var_perform +
> >>>>> 2295
> >>>>> 9 Python 0x0007ad4d
> >>>>> PyEval_EvalFrameEx + 16241
> >>>>> 10 Python 0x0007cac6
> >>>>> PyEval_EvalCodeEx + 1734
> >>>>> 11 Python 0x000274ce
> >>>>> PyClassMethod_New + 2213
> >>>>> 12 Python 0x0000c2a8 PyObject_Call
> +
> >>>>> 50
> >>>>> 13 Python 0x00015db7 PyClass_New +
> >>>>> 1710
> >>>>> 14 Python 0x0000c2a8 PyObject_Call
> +
> >>>>> 50
> >>>>> 15 Python 0x00076130
> >>>>> PyEval_CallObjectWithKeywords + 211
> >>>>> 16 Python 0x0001566f
> PyInstance_New +
> >>>>> 330
> >>>>> 17 Python 0x0000c2a8 PyObject_Call
> +
> >>>>> 50
> >>>>> 18 Python 0x0007c332
> >>>>> PyEval_EvalFrameEx + 21846
> >>>>> 19 Python 0x0007cac6
> >>>>> PyEval_EvalCodeEx + 1734
> >>>>> 20 Python 0x000274ce
> >>>>> PyClassMethod_New + 2213
> >>>>> 21 Python 0x0000c2a8 PyObject_Call
> +
> >>>>> 50
> >>>>> 22 Python 0x00015db7 PyClass_New +
> >>>>> 1710
> >>>>> 23 Python 0x0000c2a8 PyObject_Call
> +
> >>>>> 50
> >>>>> 24 Python 0x00076130
> >>>>> PyEval_CallObjectWithKeywords + 211
> >>>>> 25 Python 0x0001566f
> PyInstance_New +
> >>>>> 330
> >>>>> 26 Python 0x0000c2a8 PyObject_Call
> +
> >>>>> 50
> >>>>> 27 Python 0x0007c332
> >>>>> PyEval_EvalFrameEx + 21846
> >>>>> 28 Python 0x0007cac6
> >>>>> PyEval_EvalCodeEx + 1734
> >>>>> 29 Python 0x00027461
> >>>>> PyClassMethod_New + 2104
> >>>>> 30 Python 0x0000c2a8 PyObject_Call
> +
> >>>>> 50
> >>>>> 31 Python 0x0007c363
> >>>>> PyEval_EvalFrameEx + 21895
> >>>>> 32 Python 0x0007aedc
> >>>>> PyEval_EvalFrameEx + 16640
> >>>>> 33 Python 0x0007aedc
> >>>>> PyEval_EvalFrameEx + 16640
> >>>>> 34 Python 0x0007cac6
> >>>>> PyEval_EvalCodeEx + 1734
> >>>>> 35 Python 0x000274ce
> >>>>> PyClassMethod_New + 2213
> >>>>> 36 Python 0x0000c2a8 PyObject_Call
> +
> >>>>> 50
> >>>>> 37 Python 0x00015db7 PyClass_New +
> >>>>> 1710
> >>>>> 38 Python 0x0000c2a8 PyObject_Call
> +
> >>>>> 50
> >>>>> 39 Python 0x00076130
> >>>>> PyEval_CallObjectWithKeywords + 211
> >>>>> 40 Python 0x000a3edf initthread +
> >>>>> 1756
> >>>>> 41 libSystem.B.dylib 0x91446259
> _pthread_start +
> >>>>> 345
> >>>>> 42 libSystem.B.dylib 0x914460de thread_start +
> >>>>> 34
> >>>>> )
> >>>>> Trace/BPT trap
> >>>>>
> >>>>>
> >>>>>
> >>>>>
> ------------------------------------------------------------------------------
> >>>>> Learn Windows Azure Live! Tuesday, Dec 13, 2011
> >>>>> Microsoft is holding a special Learn Windows Azure training event for
> >>>>> developers. It will provide a great way to learn Windows Azure and
> what
> >>>>> it
> >>>>> provides. You can attend the event by watching it streamed LIVE
> online.
> >>>>> Learn more at http://p.sf.net/sfu/ms-windowsazure
> >>>>> _______________________________________________
> >>>>> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
> >>>>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> >>>>> Archives:
> http://www.mail-archive.com/pymol-users@lists.sourceforge.net
> >>>>
> >>>>
> >>>
> >>
> >
> >
> >
> ------------------------------------------------------------------------------
> > Write once. Port to many.
> > Get the SDK and tools to simplify cross-platform app development. Create
> > new or port existing apps to sell to consumers worldwide. Explore the
> > Intel AppUpSM program developer opportunity. appdeveloper.intel.com/join
> > http://p.sf.net/sfu/intel-appdev
> > _______________________________________________
> > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
> > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
>
>
> ------------------------------------------------------------------------------
> Write once. Port to many.
> Get the SDK and tools to simplify cross-platform app development. Create
> new or port existing apps to sell to consumers worldwide. Explore the
> Intel AppUpSM program developer opportunity. appdeveloper.intel.com/join
> http://p.sf.net/sfu/intel-appdev
> _______________________________________________
> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
>
------------------------------------------------------------------------------
Write once. Port to many.
Get the SDK and tools to simplify cross-platform app development. Create
new or port existing apps to sell to consumers worldwide. Explore the
Intel AppUpSM program developer opportunity. appdeveloper.intel.com/join
http://p.sf.net/sfu/intel-appdev
_______________________________________________
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