If you have fink, you can have an alternative way of installation.
fink install pymol-py27 It works well. On Wed, Dec 21, 2011 at 4:19 AM, Lauren Porter <lauren.pers...@gmail.com> wrote: > Pymol 1.3 is still available online, but it doesn't work with any versions > of python greater than 2.5. If I try to install Pymol 1.4 doesn't work when > I install it (problems with the GLEW library). I don't understand that > problem either. It looks like it can't find GLEW, but I know that its path > is included (see code below). I have never tried compiling pymol from > source before, so I have never gotten it to work. And I reinstalled my GLUT > library and rebuilt, but that did not fix the crashing problem in my > original post. Any more suggestions? Thanks! > > ~Lauren > > ... > warning: implicit declaration of function ‘glewInit’ > layer0/ShaderMgr.c:173: error: ‘GLEW_OK’ undeclared (first use in this > function) > layer0/ShaderMgr.c:173: error: (Each undeclared identifier is reported only > once > layer0/ShaderMgr.c:173: error: for each function it appears in.) > layer0/ShaderMgr.c:174: error: ‘GLEW_VERSION_2_0’ undeclared (first use in > this function) > layer0/ShaderMgr.c:185: warning: implicit declaration of function > ‘glewGetErrorString’ > ... > > 2011/12/19 Troels Emtekær Linnet <tlin...@gmail.com> >> >> Ok, maybe I am not the right person to ask. >> >> But. >> How did you get Pymol 1.3 ? >> The one in the subversion repo is 1.4.1 >> >> And it looks like you have python 2.5 >> I dont know if PyMOL needs python 2.7 >> >> Have you compiled before, where it worked? >> >> Best >> T >> >> >> Troels Emtekær Linnet >> Slotsvej 2 >> 4300 Holbæk >> Mobil: +45 60210234 >> >> >> >> 2011/12/19 Lauren Porter <lauren.pers...@gmail.com> >>> >>> Yes, I have GLUT installed (I'm using the framework), and I rerouted >>> everything to make sure it was pointing to the right path. After doing >>> that, I rebuilt and got a new error: >>> >>> >>> Python 2.5.4 (r254:67916, Aug 1 2011, 15:52:49) >>> [GCC 4.2.1 (Apple Inc. build 5646)] on darwin >>> Type "help", "copyright", "credits" or "license" for more information. >>> >>> import pymol >>> Traceback (most recent call last): >>> File "<stdin>", line 1, in <module> >>> File "/Library/Python/2.5/site-packages/pymol/__init__.py", line 473, >>> in <module> >>> import _cmd >>> ImportError: dlopen(/Library/Python/2.5/site-packages/pymol/_cmd.so, 2): >>> Symbol not found: _FT_Done_Face >>> Referenced from: /Library/Python/2.5/site-packages/pymol/_cmd.so >>> Expected in: flat namespace >>> in /Library/Python/2.5/site-packages/pymol/_cmd.so >>> >>> >>> >>> I read that this is because of a problem with the freetype 2 library, but >>> I included the library's path in the setup file, so I have no idea what else >>> to do. Any ideas? Thanks! >>> >>> ~Lauren >>> >>> >>> 2011/12/19 Troels Emtekær Linnet <tlin...@gmail.com> >>>> >>>> 2011-12-19 12:32:21.901 Python[243:5d03] *** Terminating app due to >>>> uncaught exception 'NSInvalidArgumentException', reason: '-[GLUTApplication >>>> _setup:]: unrecognized >>>> -------------------------------------- >>>> >>>> >>>> Do you have glut installed ? >>>> >>>> http://www.pymolwiki.org/index.php/Linux_Install#Requirements >>>> >>>> freeglut3-dev >>>> >>>> >>>> Best >>>> Troels >>>> >>>> >>>> >>>> 2011/12/19 Lauren Porter <lauren.pers...@gmail.com> >>>>> >>>>> Hi Everyone, >>>>> >>>>> I've compiled and installed pymol 1.3 on my Mac (OS 10.6 running >>>>> Snow Leopard), but pymol keeps crashing. The compilation looks clean, so >>>>> I >>>>> have no idea why it's giving me trouble. I have pasted the details below. >>>>> Any help would be much appreciated. Thanks! >>>>> >>>>> ~Lauren >>>>> >>>>> Python 2.5.4 (r254:67916, Aug 1 2011, 15:52:49) >>>>> [GCC 4.2.1 (Apple Inc. build 5646)] on darwin >>>>> Type "help", "copyright", "credits" or "license" for more information. >>>>> >>> import pymol >>>>> >>> pymol.finish_launching() >>>>> >>> 2011-12-19 12:32:21.895 Python[243:5d03] -[GLUTApplication >>>>> >>> _setup:]: unrecognized selector sent to instance 0x1805490 >>>>> 2011-12-19 12:32:21.898 Python[243:5d03] An uncaught exception was >>>>> raised >>>>> 2011-12-19 12:32:21.899 Python[243:5d03] -[GLUTApplication _setup:]: >>>>> unrecognized selector sent to instance 0x1805490 >>>>> selector sent to instance 0x1805490' >>>>> *** Call stack at first throw: >>>>> ( >>>>> 0 CoreFoundation 0x906e36ca __raiseError + >>>>> 410 >>>>> 1 libobjc.A.dylib 0x990c15a9 >>>>> objc_exception_throw + 56 >>>>> 2 CoreFoundation 0x9073090b >>>>> -[NSObject(NSObject) doesNotRecognizeSelector:] + 187 >>>>> 3 CoreFoundation 0x90689c06 ___forwarding___ >>>>> + 950 >>>>> 4 CoreFoundation 0x906897d2 >>>>> _CF_forwarding_prep_0 + 50 >>>>> 5 Tk 0x17e11ea8 TkpInit + 601 >>>>> 6 Tk 0x17d7d60a >>>>> Tk_PkgInitStubsCheck + 2489 >>>>> 7 _tkinter.so 0x01d9afe8 Tcl_AppInit + >>>>> 130 >>>>> 8 _tkinter.so 0x01d9af09 var_perform + >>>>> 2295 >>>>> 9 Python 0x0007ad4d >>>>> PyEval_EvalFrameEx + 16241 >>>>> 10 Python 0x0007cac6 >>>>> PyEval_EvalCodeEx + 1734 >>>>> 11 Python 0x000274ce >>>>> PyClassMethod_New + 2213 >>>>> 12 Python 0x0000c2a8 PyObject_Call + >>>>> 50 >>>>> 13 Python 0x00015db7 PyClass_New + >>>>> 1710 >>>>> 14 Python 0x0000c2a8 PyObject_Call + >>>>> 50 >>>>> 15 Python 0x00076130 >>>>> PyEval_CallObjectWithKeywords + 211 >>>>> 16 Python 0x0001566f PyInstance_New + >>>>> 330 >>>>> 17 Python 0x0000c2a8 PyObject_Call + >>>>> 50 >>>>> 18 Python 0x0007c332 >>>>> PyEval_EvalFrameEx + 21846 >>>>> 19 Python 0x0007cac6 >>>>> PyEval_EvalCodeEx + 1734 >>>>> 20 Python 0x000274ce >>>>> PyClassMethod_New + 2213 >>>>> 21 Python 0x0000c2a8 PyObject_Call + >>>>> 50 >>>>> 22 Python 0x00015db7 PyClass_New + >>>>> 1710 >>>>> 23 Python 0x0000c2a8 PyObject_Call + >>>>> 50 >>>>> 24 Python 0x00076130 >>>>> PyEval_CallObjectWithKeywords + 211 >>>>> 25 Python 0x0001566f PyInstance_New + >>>>> 330 >>>>> 26 Python 0x0000c2a8 PyObject_Call + >>>>> 50 >>>>> 27 Python 0x0007c332 >>>>> PyEval_EvalFrameEx + 21846 >>>>> 28 Python 0x0007cac6 >>>>> PyEval_EvalCodeEx + 1734 >>>>> 29 Python 0x00027461 >>>>> PyClassMethod_New + 2104 >>>>> 30 Python 0x0000c2a8 PyObject_Call + >>>>> 50 >>>>> 31 Python 0x0007c363 >>>>> PyEval_EvalFrameEx + 21895 >>>>> 32 Python 0x0007aedc >>>>> PyEval_EvalFrameEx + 16640 >>>>> 33 Python 0x0007aedc >>>>> PyEval_EvalFrameEx + 16640 >>>>> 34 Python 0x0007cac6 >>>>> PyEval_EvalCodeEx + 1734 >>>>> 35 Python 0x000274ce >>>>> PyClassMethod_New + 2213 >>>>> 36 Python 0x0000c2a8 PyObject_Call + >>>>> 50 >>>>> 37 Python 0x00015db7 PyClass_New + >>>>> 1710 >>>>> 38 Python 0x0000c2a8 PyObject_Call + >>>>> 50 >>>>> 39 Python 0x00076130 >>>>> PyEval_CallObjectWithKeywords + 211 >>>>> 40 Python 0x000a3edf initthread + >>>>> 1756 >>>>> 41 libSystem.B.dylib 0x91446259 _pthread_start + >>>>> 345 >>>>> 42 libSystem.B.dylib 0x914460de thread_start + >>>>> 34 >>>>> ) >>>>> Trace/BPT trap >>>>> >>>>> >>>>> >>>>> ------------------------------------------------------------------------------ >>>>> Learn Windows Azure Live! Tuesday, Dec 13, 2011 >>>>> Microsoft is holding a special Learn Windows Azure training event for >>>>> developers. It will provide a great way to learn Windows Azure and what >>>>> it >>>>> provides. You can attend the event by watching it streamed LIVE online. >>>>> Learn more at http://p.sf.net/sfu/ms-windowsazure >>>>> _______________________________________________ >>>>> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >>>>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >>>>> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >>>> >>>> >>> >> > > > ------------------------------------------------------------------------------ > Write once. Port to many. > Get the SDK and tools to simplify cross-platform app development. Create > new or port existing apps to sell to consumers worldwide. Explore the > Intel AppUpSM program developer opportunity. appdeveloper.intel.com/join > http://p.sf.net/sfu/intel-appdev > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net ------------------------------------------------------------------------------ Write once. Port to many. Get the SDK and tools to simplify cross-platform app development. Create new or port existing apps to sell to consumers worldwide. Explore the Intel AppUpSM program developer opportunity. appdeveloper.intel.com/join http://p.sf.net/sfu/intel-appdev _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
