Hi Spencer, unfortunately, to our knowledge, no formal documentation for the "super" align method exists. It's a "sequence-independant" (means: residue name independent) sequence alignment method based on 3D coordinates of CA atoms.
The RMSD minimizing superposition with outlier rejection is identical to the "align" command. Cheers, Thomas On 26 Nov 2014, at 07:13, Spencer Bliven <sbli...@ucsd.edu> wrote: > I would also be interested if there is any documentation about the super > algorithm and the differences to align. > > -Spencer > > On Fri, Nov 14, 2014 at 10:25 PM, Osvaldo Martin <aloctavo...@gmail.com> > wrote: > Hi, > > Exactly which algorithm is behind the super command? How the outliers pairs > are defined? The is some scientific paper related to super or it is really > an experimental idea? > > Thanks. -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ------------------------------------------------------------------------------ Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server from Actuate! Instantly Supercharge Your Business Reports and Dashboards with Interactivity, Sharing, Native Excel Exports, App Integration & more Get technology previously reserved for billion-dollar corporations, FREE http://pubads.g.doubleclick.net/gampad/clk?id=157005751&iu=/4140/ostg.clktrk _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
