Hi Spencer -
If you need a superposition algorithm with a published reference, try
CEAlign<http://www.pymolwiki.org/index.php/Cealign>. Some references are
listed on the page for the former CEAlign
Plugin<http://www.pymolwiki.org/index.php/Cealign_plugin#References> from
before it was incorporated into PyMOL (in version 1.3).
Just be careful to note that the order of the first two arguments (target,
mobile) is switched compared to the `super` and `align` commands (mobile,
target).
Cheers,
Jared
--
Jared Sampson
Xiangpeng Kong Lab
NYU Langone Medical Center
http://kong.med.nyu.edu/
On Nov 26, 2014, at 7:13 AM, Spencer Bliven
<sbli...@ucsd.edu<mailto:sbli...@ucsd.edu>> wrote:
I would also be interested if there is any documentation about the super
algorithm and the differences to align.
-Spencer
On Fri, Nov 14, 2014 at 10:25 PM, Osvaldo Martin
<aloctavo...@gmail.com<mailto:aloctavo...@gmail.com>> wrote:
Hi,
Exactly which algorithm is behind the super command? How the outliers pairs are
defined? The is some scientific paper related to super or it is really an
experimental idea?
Thanks.
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